RetrogeneDB ID: | retro_meug_683 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold160680:2..674(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 84.58 % |
Parental protein coverage: | 56.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKEV |
H.KFSAPRHGSLGFLPRKRSSRH.GKVKSF.KDDP.KPIHL.AFLGYK.GMTHIV.EVDR.GSKV.K.EV | |
Retrocopy | HWKFSAPRHGSLGFLPRKRSSRHWGKVKSFSKDDPFKPIHLIAFLGYKVGMTHIVQEVDRTGSKVIKREV |
Parental | VEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDG |
VEAV..VE.P.MV...IV.Y.QT..GL.SFKTIFAEHISDE..RRFYKNWHKSKKKAFTKYCKKWQ.EDG | |
Retrocopy | VEAVITVEMPSMV---IVRYAQTL*GL*SFKTIFAEHISDEYMRRFYKNWHKSKKKAFTKYCKKWQYEDG |
Parental | KKQLEKDLSSMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTVFG |
KK.LEK.L.SMKKYCQVI.VIAHTQMRLLPLRQKKSHLMEIQVNGG.V.EKLDWA.EKLEQQVPVST.FG | |
Retrocopy | KKHLEKYLKSMKKYCQVIHVIAHTQMRLLPLRQKKSHLMEIQVNGGRVTEKLDWAHEKLEQQVPVSTMFG |
Parental | QDEMIDVIGVTKGKGYK |
QDEMIDVIGV.KGK.YK | |
Retrocopy | QDEMIDVIGVMKGKIYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |