Parental gene:

RPL3, ENSBTAG00000003228

Aliases:None
Description:60S ribosomal protein L3 [Source:UniProtKB/Swiss-Prot;Acc:P39872]
Organism:Cow (Bos taurus)
Coordinates:5:111261437..111267705(-)


>ENSBTAG00000003228
ATGTCTCACAGGAAGTTCTCTGCTCCCAGGCATGGGTCCCTGGGCTTCCTGCCTCGGAAGCGCAGCAGCCGGCACCGCGG
GAAGGTGAAGAGCTTCCCCAAGGATGACTCTTCCAAGCCTGTGCACCTCACTGCCTTTCTTGGCTACAAGGCTGGCATGA
CCCACATTGTGAGGGAGGTCGATAGGCCAGGGTCCAAGGTGAACAAGAAGGAAGTGGTGGAGGCTGTGACCATCGTGGAG
ACTCCGCCCATGGTGATTGTGGGCATCGTGGGCTACGTGGAAACACCCCGAGGCCTCCGGACCTTTAAGACCATCTTTGC
TGAGCATATCAGCGACGAGTGCAAAAGGCGCTTCTACAAGAACTGGCATAAGTCCAAGAAGAAGGCCTTCACCAAATACT
GCAAGAAGTGGCAGGACGCAGACGGCAAGAAGCAGCTTGAGAGGGACTTCAGCAGCATGAAGAAGTACTGTCAGGTCATC
CGTGTCATTGCCCACACCCAGATGCGCCTGCTTCCTCTGCGCCAGAAGAAGGCCCACCTCATGGAGGTCCAGGTGAACGG
AGGCACTGTGGCCGAGAAACTGGACTGGGCCCGTGAGAGGCTCGAGCAGCAGGTCCCTGTGAGCCAAGTGTTTGGCCAGG
ATGAGATGATTGATGTCATTGGGGTGACCAAGGGCAAAGGCTACAAAGGTGTCACCAGCCGTTGGCACACCAAGAAGCTG
CCCCGTAAGACCCACCGAGGACTGCGCAAGGTTGCCTGTATTGGGGCGTGGCATCCTGCCCGGGTGGCCTTCTCTGTGGC
TCGGGCTGGGCAGAAAGGCTACCATCACCGCACTGAGATCAACAAGAAGATCTACAAGATTGGTCAGGGCTACCTCATCA
AGGACGGCAAACTGATCAAGAACAATGCCTCTACTGATTACGATCTGTCTGACAAGAGCATCAACCCTCTGGGTGGCTTT
GTCCACTACGGTGAGGTGACCAATGACTTTGTCATGCTCAAAGGCTGCGTGGTGGGAACCAAGAAGCGAGTGCTCACTCT
GCGCAAGTCCTTGCTGGTACAGACCAAACGGCGGGCCCTGGAGAAGATCGACCTCAAATTTATTGATACCACCTCCAAAT
TTGGTCATGGTCGCTTCCAGACTGTGGAGGAGAAGAAAGCCTTCATGGGACCACTTAAGAAGGACCGAATTGCAAAGGAA
GAAGGGGCCTAA

Library Parental gene expression (RPM)
ERP005899_liver 131 .79 RPM
ERP005899_muscle 1601 .41 RPM
SRP017611_brain 113 .28 RPM
SRP017611_kidney 322 .38 RPM
SRP017611_liver 269 .94 RPM
SRP030211_testis 241 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010853 possible_ortholog 1 retrogene
retro_amel_1115,
Canis familiaris ENSCAFG00000001346 possible_ortholog 1 retrogene
retro_cfam_97,
Callithrix jacchus ENSCJAG00000016276 possible_ortholog 6 retrogenes
retro_cjac_1198, retro_cjac_1972, retro_cjac_2157, retro_cjac_2264, retro_cjac_3079, retro_cjac_823,
Dasypus novemcinctus ENSDNOG00000001121 possible_ortholog 4 retrogenes
retro_dnov_1359, retro_dnov_1641, retro_dnov_652, retro_dnov_788,
Equus caballus ENSECAG00000020665 ortholog_one2one 1 retrogene
retro_ecab_897,
Erinaceus europaeus ENSEEUG00000014661 possible_ortholog 2 retrogenes
retro_eeur_488, retro_eeur_557,
Echinops telfairi ENSETEG00000011380 possible_ortholog 5 retrogenes
retro_etel_1646, retro_etel_2199, retro_etel_2212, retro_etel_657, retro_etel_972,
Felis catus ENSFCAG00000005820 possible_ortholog 1 retrogene
retro_fcat_1809,
Homo sapiens ENSG00000100316 possible_ortholog 9 retrogenes
retro_hsap_1341, retro_hsap_2403, retro_hsap_2529, retro_hsap_3328, retro_hsap_3448, retro_hsap_3638, retro_hsap_3889, retro_hsap_4081, retro_hsap_4749,
Gorilla gorilla ENSGGOG00000002326 possible_ortholog 10 retrogenes
retro_ggor_1043, retro_ggor_1295, retro_ggor_1582, retro_ggor_1822, retro_ggor_2329, retro_ggor_2616, retro_ggor_2713, retro_ggor_2736, retro_ggor_2955, retro_ggor_36,
Macropus eugenii ENSMEUG00000009789 ortholog_one2many 26 retrogenes
retro_meug_1045, retro_meug_118, retro_meug_1210, retro_meug_1403, retro_meug_1452, retro_meug_1492, retro_meug_1516, retro_meug_1554, retro_meug_1589, retro_meug_1604, retro_meug_1698, retro_meug_1856, retro_meug_2150, retro_meug_2151, retro_meug_221, retro_meug_367, retro_meug_412, retro_meug_461, retro_meug_592, retro_meug_677, retro_meug_683, retro_meug_831, retro_meug_851, retro_meug_886, retro_meug_889, retro_meug_898,
Microcebus murinus ENSMICG00000015832 possible_ortholog 1 retrogene
retro_mmur_1307,
Myotis lucifugus ENSMLUG00000023711 possible_ortholog 1 retrogene
retro_mluc_810,
Macaca mulatta ENSMMUG00000010029 possible_ortholog 4 retrogenes
retro_mmul_1170, retro_mmul_149, retro_mmul_2334, retro_mmul_973,
Monodelphis domestica ENSMODG00000009539 ortholog_one2many 2 retrogenes
retro_mdom_380, retro_mdom_408,
Mustela putorius furo ENSMPUG00000013271 possible_ortholog 3 retrogenes
retro_mputfur_1284, retro_mputfur_199, retro_mputfur_774,
Mus musculus ENSMUSG00000060036 possible_ortholog 30 retrogenes
retro_mmus_1148, retro_mmus_1158, retro_mmus_1164, retro_mmus_1165, retro_mmus_1167, retro_mmus_1183, retro_mmus_1238, retro_mmus_1239, retro_mmus_1240, retro_mmus_1241, retro_mmus_1242, retro_mmus_1243, retro_mmus_1244, retro_mmus_1245, retro_mmus_1246, retro_mmus_1465, retro_mmus_1548, retro_mmus_2231, retro_mmus_2275, retro_mmus_2276, retro_mmus_2474, retro_mmus_2501, retro_mmus_2547, retro_mmus_2849, retro_mmus_3125, retro_mmus_3215, retro_mmus_3422, retro_mmus_3467, retro_mmus_361, retro_mmus_897,
Nomascus leucogenys ENSNLEG00000015234 possible_ortholog 2 retrogenes
retro_nleu_1038, retro_nleu_1449,
Oryctolagus cuniculus ENSOCUG00000027712 possible_ortholog 4 retrogenes
retro_ocun_105, retro_ocun_179, retro_ocun_1893, retro_ocun_558,
Otolemur garnettii ENSOGAG00000000032 possible_ortholog 7 retrogenes
retro_ogar_1264, retro_ogar_1679, retro_ogar_2096, retro_ogar_2122, retro_ogar_2448, retro_ogar_3431, retro_ogar_960,
Ochotona princeps ENSOPRG00000013088 possible_ortholog 3 retrogenes
retro_opri_1004, retro_opri_1014, retro_opri_432,
Procavia capensis ENSPCAG00000010642 possible_ortholog 1 retrogene
retro_pcap_115,
Pongo abelii ENSPPYG00000011837 possible_ortholog 10 retrogenes
retro_pabe_1113, retro_pabe_1861, retro_pabe_2167, retro_pabe_2743, retro_pabe_2985, retro_pabe_3170, retro_pabe_3318, retro_pabe_3349, retro_pabe_3696, retro_pabe_3761,
Pteropus vampyrus ENSPVAG00000003204 possible_ortholog 2 retrogenes
retro_pvam_1220, retro_pvam_1390,
Rattus norvegicus ENSRNOG00000016896 possible_ortholog 2 retrogenes
retro_rnor_1333, retro_rnor_731,
Sarcophilus harrisii ENSSHAG00000003212 ortholog_many2many 2 retrogenes
retro_shar_154, retro_shar_662,
Tupaia belangeri ENSTBEG00000005989 possible_ortholog 1 retrogene
retro_tbel_939,
Tursiops truncatus ENSTTRG00000010880 ortholog_one2one 2 retrogenes
retro_ttru_1266, retro_ttru_1518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_281 95.71 52.11
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2. retro_btau_341 95.04 100.00
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3. retro_btau_1644 83.65 65.26
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Download FASTA sequences of all ENSBTAG00000003228 retrocopies