RetrogeneDB ID: | retro_meug_1210 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold327893:2419..3198(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 85.93 % |
Parental protein coverage: | 65.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
SHRKFSAPRHG.LGFL.RKRSSR..GKVK.F.KDDPSKPIHLTAFLGYKAGM.HIVREVDRP.SKVNKKE | |
Retrocopy | SHRKFSAPRHGCLGFLLRKRSSRQQGKVKRFLKDDPSKPIHLTAFLGYKAGMSHIVREVDRPSSKVNKKE |
Parental | VVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDED |
.V.AVTI.ETP.MVIVGIVG.VQTPRGLRSF.TIFA.HISDE.KR.FYKNWHK.KKKAFTKYCKKWQDED | |
Retrocopy | MVKAVTIMETPLMVIVGIVGFVQTPRGLRSFETIFAKHISDEYKRQFYKNWHKFKKKAFTKYCKKWQDED |
Parental | GKKQLEKDLSSMKKYCQVIRVIAHTQMRLLPL-RQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTV |
GKKQLEKDLSSMKKYCQVI.VIAHTQ.RLLPL..QK.SHLMEIQVNGGSVAEKLDWA.EKLEQQVPVST. | |
Retrocopy | GKKQLEKDLSSMKKYCQVICVIAHTQLRLLPL<EQK-SHLMEIQVNGGSVAEKLDWACEKLEQQVPVSTL |
Parental | FGQDEMIDVIGVTKGKGYKXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVA |
F.QDEMIDVIGVTKGKGYK...S.WHTKKLP.KT..GL.KVA.IGAWHPA..A | |
Retrocopy | FRQDEMIDVIGVTKGKGYKGVTSCWHTKKLPQKT-QGLHKVAFIGAWHPAQIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |