RetrogeneDB ID: | retro_mmul_2334 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:39641958..39642841(-) | ||
Located in intron of: | ENSMMUG00000029007 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMMUG00000010029 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:RefSeq peptide;Acc:NP_001180483] |
Percent Identity: | 77.1 % |
Parental protein coverage: | 84.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | HIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHK |
HIV...DR.G.KVN.KEVVEAVTIVET.P.VVVGI.GY.ETP.GL...KT.F.EHIS.ECKRRFY.NWHK | |
Retrocopy | HIVWKADRLGPKVNRKEVVEAVTIVETLPIVVVGILGYMETPQGL*ISKTIFVEHISNECKRRFYRNWHK |
Parental | SKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKL |
.K.KAFTKYCKKWQ.ED.KKQLEKDF.SMKKYCQVIR....TQM.LLPL.QKK.H.ME.QVN.GTVAEKL | |
Retrocopy | AK*KAFTKYCKKWQGEDDKKQLEKDFNSMKKYCQVIRINTYTQMHLLPLCQKKTHVMETQVNRGTVAEKL |
Parental | DWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAF |
DW..ERLE.QVPV.QVFGQD.MID...VTKGKGYK.VTS.W.T.KLP.KTH.GL..VA.IGAWHPA...F | |
Retrocopy | DWSLERLEDQVPVKQVFGQDKMIDIKWVTKGKGYKEVTSHWYTNKLPYKTH*GLCRVAYIGAWHPAHMTF |
Parental | SVARAGQKGYHHR-TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVML |
SVA..GQKGYHH..TE.NK.IYKI.QGY.IKDGKLI..NASTDYDLSDKSINPLGGFVHYG.VTNDFVML | |
Retrocopy | SVACTGQKGYHHL>TEFNKRIYKISQGYFIKDGKLI--NASTDYDLSDKSINPLGGFVHYGKVTNDFVML |
Parental | KGCVVGTKKRVLTLRKS |
KGCVVGTKK..L.L.KS | |
Retrocopy | KGCVVGTKKQGLILHKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 88 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 471 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 130 .96 RPM |
SRP007412_heart | 0 .06 RPM | 122 .84 RPM |
SRP007412_kidney | 0 .12 RPM | 153 .87 RPM |
SRP007412_liver | 0 .04 RPM | 264 .62 RPM |
SRP007412_testis | 0 .08 RPM | 165 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2741 |
Pongo abelii | retro_pabe_3318 |