Parental gene:

LSM14A, ENSGGOG00000001762

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:19:31411150..31475670(+)


>ENSGGOG00000001762
TACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTACACCATCGACACCGAAAA
CTCCACCGTAGCCCTTGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTCCAATACCACCTCGAGATG
AAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCT
TTGCCTCAAGACCCAGCTATTGTTCAGTCTTCACTAGGCTCGTCGACTTCTTCATTCCAGTCCATGGGTTCTTATGGACC
TTTCGGCCGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTGCTG
GAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGTGCGGTTGGTTCTGCCTTT
ACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGACCCTTTGAGAAAAAGCCC
AACCATGGAACAAGCAGTGCAGACCGCCTCAGCCCACTTACCTGCTCCAGCAGCTGTTGGGAGAAGGAGTCCTGTATCAA
CCAGGCCTTTGCCATCTGCCAGCCAAAAGGCAGGAGAGAATCAGGAGCACAGGCGAGCTGAAGTACACAAAGTTTCAAGG
CCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAGCTCCAGGTGCTCCTTCAGCTCCAAGGAGAGGGCGTGG
GGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGAAAGACTTTGACTTTGAAA
GTGCAAATGCACAATTCAACAAGGAAGAGATTGACAGAGAGTTTCATAATAAACTTAAATTAAAAGAAGATAAACTTGAG
AAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACCCAAAACAGTGAAGGAAATGCCGATGA
AGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTTGATAATATTTCTTGTGATGACAATAGAG
AACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTTCGTCCAAACCGTGGCCGT
GGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAGAGGTGGTACCTTCACTGC
CCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTGAATATAGGAAAACCACAG
CTTTTGGACCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 53 .13 RPM
SRP007412_cerebellum 75 .84 RPM
SRP007412_heart 29 .99 RPM
SRP007412_kidney 103 .45 RPM
SRP007412_liver 57 .87 RPM
SRP007412_testis 159 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006555 ortholog_one2one 1 retrogene
retro_chof_1375,
Microcebus murinus ENSMICG00000011598 ortholog_one2one 1 retrogene
retro_mmur_1605,
Myotis lucifugus ENSMLUG00000003368 ortholog_one2many 1 retrogene
retro_mluc_1793,
Macaca mulatta ENSMMUG00000021614 ortholog_one2one 2 retrogenes
retro_mmul_1386, retro_mmul_1860,
Nomascus leucogenys ENSNLEG00000011713 ortholog_one2one 4 retrogenes
retro_nleu_1299, retro_nleu_2544, retro_nleu_2580, retro_nleu_485,
Oryctolagus cuniculus ENSOCUG00000011872 ortholog_one2many 2 retrogenes
retro_ocun_193, retro_ocun_860,
Otolemur garnettii ENSOGAG00000002492 ortholog_one2one 2 retrogenes
retro_ogar_2586, retro_ogar_67,
Pongo abelii ENSPPYG00000009832 ortholog_one2one 2 retrogenes
retro_pabe_1693, retro_pabe_2906,
Pan troglodytes ENSPTRG00000010813 ortholog_one2one 3 retrogenes
retro_ptro_1343, retro_ptro_2389, retro_ptro_863,
Rattus norvegicus ENSRNOG00000021133 ortholog_one2one 1 retrogene
retro_rnor_2397,
Ictidomys tridecemlineatus ENSSTOG00000002785 ortholog_one2one 1 retrogene
retro_itri_170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_2378 79.63 83.15
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Download FASTA sequences of all ENSGGOG00000001762 retrocopies