Parental gene:

MMU.4286, ENSMMUG00000021614

Aliases:None
Description:protein LSM14 homolog A [Source:RefSeq peptide;Acc:NP_001244883]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:19:40724721..40785004(+)


>ENSMMUG00000021614
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACCGAAAACTCCACCGTAGCCCTTGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATCGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTC
CATGGGTTCTTACGGGCCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAACTCTTTGACGTCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATTCAAGATCTCTAAAAACACAGTTATCTCAAGGTCGTTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCGGCCCACTTACCTGCTCCAGCACCTGTTGGGA
GAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTACCAGCCAAAAAGCAATAGAGAATCAGGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAGCTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTCAACAAGGAAGAGATTGACAGAGAGTTTCATAATAAACTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACCCAAAACAG
TGAAGGAAATGCTGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTTGATAATATTT
CTTGTGATGACAATAGAGAACGAAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGAGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAACCACAGCTTTTGGACCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 41 .79 RPM
SRP007412_brain_prefrontal_cortex 33 .08 RPM
SRP007412_cerebellum 68 .32 RPM
SRP007412_heart 48 .52 RPM
SRP007412_kidney 61 .50 RPM
SRP007412_liver 29 .57 RPM
SRP007412_testis 106 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006555 ortholog_one2many 1 retrogene
retro_chof_1375,
Callithrix jacchus ENSCJAG00000010360 possible_ortholog 5 retrogenes
retro_cjac_1582, retro_cjac_2625, retro_cjac_3201, retro_cjac_3327, retro_cjac_840,
Gorilla gorilla ENSGGOG00000001762 ortholog_one2one 1 retrogene
retro_ggor_2378,
Microcebus murinus ENSMICG00000011598 ortholog_one2many 1 retrogene
retro_mmur_1605,
Myotis lucifugus ENSMLUG00000003368 ortholog_many2many 1 retrogene
retro_mluc_1793,
Nomascus leucogenys ENSNLEG00000011713 ortholog_one2one 4 retrogenes
retro_nleu_1299, retro_nleu_2544, retro_nleu_2580, retro_nleu_485,
Oryctolagus cuniculus ENSOCUG00000011872 ortholog_many2many 2 retrogenes
retro_ocun_193, retro_ocun_860,
Otolemur garnettii ENSOGAG00000002492 ortholog_one2many 2 retrogenes
retro_ogar_2586, retro_ogar_67,
Pongo abelii ENSPPYG00000009832 ortholog_one2one 2 retrogenes
retro_pabe_1693, retro_pabe_2906,
Pan troglodytes ENSPTRG00000010813 ortholog_one2one 3 retrogenes
retro_ptro_1343, retro_ptro_2389, retro_ptro_863,
Rattus norvegicus ENSRNOG00000021133 ortholog_one2many 1 retrogene
retro_rnor_2397,
Ictidomys tridecemlineatus ENSSTOG00000002785 ortholog_one2many 1 retrogene
retro_itri_170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1386 87.26 55.94
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2. retro_mmul_1860 79.48 57.67
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Download FASTA sequences of all ENSMMUG00000021614 retrocopies