Parental gene:

LSM14A, ENSPPYG00000009832

Aliases:LSM14A, FAM61A
Description:Protein LSM14 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q5R4R4]
Organism:Orangutan (Pongo abelii)
Coordinates:19:34839441..34900819(+)


>ENSPPYG00000009832
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACTGAAAACTCCACCGTAGCCCTTGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAGGCTCATCGACCTCTTCATTCCAGTC
CATGGGTTCTTATGGGCCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCTTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCGGCCCACTTACCTGCTCCAGCAGCTGTTGGGA
GAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTACCAGCCAAAAGGCAGGAGAGAATCCGGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAGCTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTCAACAAGGAAGAGATTGACAGAGAGTTTCATAATAAACTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAACCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACCCAAAACAG
TGAAGGAAATGCTGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTCGATAATATTT
CTTGTGATGACAATAGAGAACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAACCACAGCTTTTGGACCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 47 .05 RPM
SRP007412_cerebellum 77 .34 RPM
SRP007412_heart 36 .12 RPM
SRP007412_kidney 69 .71 RPM
SRP007412_liver 35 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006555 ortholog_one2one 1 retrogene
retro_chof_1375,
Gorilla gorilla ENSGGOG00000001762 ortholog_one2one 1 retrogene
retro_ggor_2378,
Microcebus murinus ENSMICG00000011598 ortholog_one2one 1 retrogene
retro_mmur_1605,
Myotis lucifugus ENSMLUG00000003368 ortholog_one2many 1 retrogene
retro_mluc_1793,
Macaca mulatta ENSMMUG00000021614 ortholog_one2one 2 retrogenes
retro_mmul_1386, retro_mmul_1860,
Nomascus leucogenys ENSNLEG00000011713 ortholog_one2one 4 retrogenes
retro_nleu_1299, retro_nleu_2544, retro_nleu_2580, retro_nleu_485,
Oryctolagus cuniculus ENSOCUG00000011872 ortholog_one2many 2 retrogenes
retro_ocun_193, retro_ocun_860,
Otolemur garnettii ENSOGAG00000002492 ortholog_one2one 2 retrogenes
retro_ogar_2586, retro_ogar_67,
Pan troglodytes ENSPTRG00000010813 ortholog_one2one 3 retrogenes
retro_ptro_1343, retro_ptro_2389, retro_ptro_863,
Rattus norvegicus ENSRNOG00000021133 ortholog_one2one 1 retrogene
retro_rnor_2397,
Ictidomys tridecemlineatus ENSSTOG00000002785 ortholog_one2one 1 retrogene
retro_itri_170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1693 87.70 66.74
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2. retro_pabe_2906 76.24 82.07
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Download FASTA sequences of all ENSPPYG00000009832 retrocopies