Parental gene:

LSM14A, ENSPTRG00000010813

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:19:39345414..39407006(+)


>ENSPTRG00000010813
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACCGAAAACTCCACCGTAGCCCTTGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTC
CATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCAGCCCACGTACCTGCTCCAGCAGCTGTTGGGA
GAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTGCCAGCCAAAAGGCAGGAGAGAATCAGGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAGCAAGAGACAAGTAGCTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTCAACAAGGAAGAGATTGACAGAGAGTTTCATAATAAACTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACCCAAAACAG
TGAAGGAAATGCCGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAGTCCTTCTTTGATAATATTT
CTTGTGATGACAATAGAGAACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAACCACAGCTTTTGGACCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 35 .53 RPM
SRP007412_cerebellum 54 .17 RPM
SRP007412_heart 41 .53 RPM
SRP007412_kidney 58 .79 RPM
SRP007412_liver 37 .06 RPM
SRP007412_testis 139 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006555 ortholog_one2one 1 retrogene
retro_chof_1375,
Gorilla gorilla ENSGGOG00000001762 ortholog_one2one 1 retrogene
retro_ggor_2378,
Microcebus murinus ENSMICG00000011598 ortholog_one2one 1 retrogene
retro_mmur_1605,
Myotis lucifugus ENSMLUG00000003368 ortholog_one2many 1 retrogene
retro_mluc_1793,
Macaca mulatta ENSMMUG00000021614 ortholog_one2one 2 retrogenes
retro_mmul_1386, retro_mmul_1860,
Nomascus leucogenys ENSNLEG00000011713 ortholog_one2one 4 retrogenes
retro_nleu_1299, retro_nleu_2544, retro_nleu_2580, retro_nleu_485,
Oryctolagus cuniculus ENSOCUG00000011872 ortholog_one2many 2 retrogenes
retro_ocun_193, retro_ocun_860,
Otolemur garnettii ENSOGAG00000002492 ortholog_one2one 2 retrogenes
retro_ogar_2586, retro_ogar_67,
Pongo abelii ENSPPYG00000009832 ortholog_one2one 2 retrogenes
retro_pabe_1693, retro_pabe_2906,
Rattus norvegicus ENSRNOG00000021133 ortholog_one2one 1 retrogene
retro_rnor_2397,
Ictidomys tridecemlineatus ENSSTOG00000002785 ortholog_one2one 1 retrogene
retro_itri_170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_863 98.12 68.90
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2. retro_ptro_1343 83.73 98.92
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3. retro_ptro_2389 80.16 82.07
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Download FASTA sequences of all ENSPTRG00000010813 retrocopies