Parental gene: | LSM14A, ENSPTRG00000010813 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 19:39345414..39407006(+) |
>ENSPTRG00000010813
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACCGAAAACTCCACCGTAGCCCTTGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTC
CATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCAGCCCACGTACCTGCTCCAGCAGCTGTTGGGA
GAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTGCCAGCCAAAAGGCAGGAGAGAATCAGGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAGCAAGAGACAAGTAGCTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTCAACAAGGAAGAGATTGACAGAGAGTTTCATAATAAACTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACCCAAAACAG
TGAAGGAAATGCCGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAGTCCTTCTTTGATAATATTT
CTTGTGATGACAATAGAGAACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAACCACAGCTTTTGGACCCTAA
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACCGAAAACTCCACCGTAGCCCTTGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTC
CATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCAGCCCACGTACCTGCTCCAGCAGCTGTTGGGA
GAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTGCCAGCCAAAAGGCAGGAGAGAATCAGGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAGCAAGAGACAAGTAGCTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTCAACAAGGAAGAGATTGACAGAGAGTTTCATAATAAACTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACCCAAAACAG
TGAAGGAAATGCCGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAGTCCTTCTTTGATAATATTT
CTTGTGATGACAATAGAGAACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAACCACAGCTTTTGGACCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 35 .53 RPM |
| SRP007412_cerebellum | 54 .17 RPM |
| SRP007412_heart | 41 .53 RPM |
| SRP007412_kidney | 58 .79 RPM |
| SRP007412_liver | 37 .06 RPM |
| SRP007412_testis | 139 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006555 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000001762 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011598 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000003368 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000021614 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011713 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011872 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002492 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000009832 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021133 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002785 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_863 | 98.12 | 68.90 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1343 | 83.73 | 98.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2389 | 80.16 | 82.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000010813 retrocopies