RetrogeneDB ID: retro_mluc_1793

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429911:3231128..3232490(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003368
• Aliases: None
• Description: None

Sequence

>retro_mluc_1793
AGTGGGGACACCCCATACATCAGCAGCAAGATCAGCCTTATCTCCAAGGCGGAGATCCGCTACGAGGGCATACTCTACAC
CATCGACACCGAGAACTCCACCATAGCTCTCGCCAAAGTTCGGTCCTTTGGTACAGAAGACAGACAAACAGATTATCCAA
TACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGAAGTGATATTAAAGACCTCACTGTTTGTGAGCCGCCA
AAACCACAATGTTCTTTGCCTCAGGACCCAGCTATCGTTCAGTCTTCACTAGGCTCATCTACTTCTTCATTCCAGTCAGT
GGGTTCCTATGGACCTTTTGGCAGGATGTCGATGTACAGTCAGTTCAGTCCAAGTTCATTAGTTGAGCAGCAATTTGGTG
CTGTTGGTGTTGCTGGAAGCTCCTTGACATCCTTTGGAACAGAAACATCAAACAGCGGTACCCTGTCCCAAAGTAGTGCA
GTTGGTTCTGCCTTTACACAGGATACAAGATCTGTAAAAACACAGTTATCTCAAGGTCGTTCAAGCCCTCAGTTAGATCC
TTTGAGAAAAAGCCCTACCATGGAACAAGCAGTAGAGACTGCCTCGGCCCATTTACCTGCTCCAGCACCTGTTGGGAGAA
GGAGCCCTGTATCAACCAGGCCTTTACCATCTACCAGCCAAAAAGCAATAAAGAATCAAGAGCACAGGCGAGCTGATATA
CACAAAGTTTCAAGACCAGAAAATGAGCAACTTAGAAATGATAGCAAGAGACAAATAGTTCCAGGTGCTCTTTCAGTTCC
AAGGAGAGGGTGTGGGAGTCATCGAGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGTCCTATGAAATTTGAGAAAG
ACTTTGAAAGTGCAAATGCACCATTTAACAAGGAGGAAATTGACAGAGAGTTTCATAATAAACTTAAATTGGAAGTTGAA
GATAAACTTGAGAAACAGGAGAAGCCTATAAATGGTGAAGATAAAGGAGACTCAGGTGTTGATACTCAAAACAGTGAAGG
AAATGCAGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTTGATAACATTTCTTGTG
ATTATAATAGAGAATGGAGACCGACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTTCATCCA
AACCGAGGCCTGGGGGGGTACAGAGGCAGAGGAGGTCTTGGTTTCCTTGGTGGCTGAGGGCGTGGTGATGGTAGAGCTTG
TACCTCCACCACCCCTCAAGGATTTTGTAGTGGATTCAGAGGAGGTCGTGGGAGCAGGGAATTTGCAGATTTTGAATATA
GG

Alignment

ORF - retro_mluc_1793 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.76 %
• Parental protein coverage: 97.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD
          SG.TPYI.SKISLISKAEIRYEGILYTIDTENST.ALAKVRSFGTEDR.TD.PIPPRDEVFEYIIFRGSD
Retrocopy SGDTPYISSKISLISKAEIRYEGILYTIDTENSTIALAKVRSFGTEDRQTDYPIPPRDEVFEYIIFRGSD

Parental  IKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSVGSYGPFGRMSTYSQFSPSSLVGQQFGAVGVAGS
          IKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSVGSYGPFGRMS.YSQFSPSSLV.QQFGAVGVAGS
Retrocopy IKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSVGSYGPFGRMSMYSQFSPSSLVEQQFGAVGVAGS

Parental  SLTSFGTETSNSSTLSQSSAVGSAFTQDTRSVKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAPAP
          SLTSFGTETSNS.TLSQSSAVGSAFTQDTRSVKTQLSQGRSSPQLDPLRKSPTMEQAV.TASAHLPAPAP
Retrocopy SLTSFGTETSNSGTLSQSSAVGSAFTQDTRSVKTQLSQGRSSPQLDPLRKSPTMEQAVETASAHLPAPAP

Parental  VGRRSPVSTRPLPSTSQKAIENQEHRRADIHKVSRPENEQLRNDSKRQIVPGAPSAPRRGRGCHRGGRGR
          VGRRSPVSTRPLPSTSQKAI.NQEHRRADIHKVSRPENEQLRNDSKRQIVPGA.S.PRRG.G.HRGGRGR
Retrocopy VGRRSPVSTRPLPSTSQKAIKNQEHRRADIHKVSRPENEQLRNDSKRQIVPGALSVPRRGCGSHRGGRGR

Parental  FGIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKVEDKLEKQEKPINGEDKGDSGVDTLNSEGN
          FGIRRDGPMKFEK..DFESANA.FNKEEIDREFHNKLKL.VEDKLEKQEKPINGEDKGDSGVDT.NSEGN
Retrocopy FGIRRDGPMKFEK--DFESANAPFNKEEIDREFHNKLKLEVEDKLEKQEKPINGEDKGDSGVDTQNSEGN

Parental  ADEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG
          ADEEDPLGPNCYYDKTKSFFDNISCD.NRE.RPTWAEERRLNAETFGIPL.PNRG.GGYRGRGGLGF.GG
Retrocopy ADEEDPLGPNCYYDKTKSFFDNISCDYNREWRPTWAEERRLNAETFGIPLHPNRGLGGYRGRGGLGFLGG

Parental  RGRGGGRGGTFTTPRGFRGGFRGGRGGREFADFEYR
          .GRG.GR..T.TTP.GF..GFRGGRG.REFADFEYR
Retrocopy *GRGDGRACTSTTPQGFCSGFRGGRGSREFADFEYR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1793 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 13 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000006555	1 retrocopy	retro_chof_1375,
Callithrix jacchus	ENSCJAG00000010360	5 retrocopies	retro_cjac_1582, retro_cjac_2625, retro_cjac_3201, retro_cjac_3327, retro_cjac_840,
Gorilla gorilla	ENSGGOG00000001762	1 retrocopy	retro_ggor_2378,
Microcebus murinus	ENSMICG00000011598	1 retrocopy	retro_mmur_1605,
Myotis lucifugus	ENSMLUG00000003368	1 retrocopy	retro_mluc_1793 ,
Macaca mulatta	ENSMMUG00000021614	2 retrocopies	retro_mmul_1386, retro_mmul_1860,
Nomascus leucogenys	ENSNLEG00000011713	4 retrocopies	retro_nleu_1299, retro_nleu_2544, retro_nleu_2580, retro_nleu_485,
Oryctolagus cuniculus	ENSOCUG00000011872	2 retrocopies	retro_ocun_193, retro_ocun_860,
Otolemur garnettii	ENSOGAG00000002492	2 retrocopies	retro_ogar_2586, retro_ogar_67,
Pongo abelii	ENSPPYG00000009832	2 retrocopies	retro_pabe_1693, retro_pabe_2906,
Pan troglodytes	ENSPTRG00000010813	3 retrocopies	retro_ptro_1343, retro_ptro_2389, retro_ptro_863,
Rattus norvegicus	ENSRNOG00000021133	1 retrocopy	retro_rnor_2397,
Ictidomys tridecemlineatus	ENSSTOG00000002785	1 retrocopy	retro_itri_170,