Parental gene:

HNRNPA1L2, ENSLAFG00000029587

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_2:40687243..40690869(+)


>ENSLAFG00000029587
TCTCCTAAAGAGCCCGAACAGCTGCGGAAACTCTTCATCGGAGGTTTGAGCTTTGAAACAACGGATGAGAGTTTGAGGAG
CCATTTTGAGCAATGGGGGACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGAGGCTTTGGGT
TTGTTACTTATTCTACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCACACAAAGTAGACGGAAGAGTTGTGGAA
CCAAAGAGGGCTGTCTCACGAGAAGACTCTCAAAGACCAGGTGCCCATTTAACTGTGAAAAAGATCTTTGTTGGTGGCAT
TAAAGAAGACACTGAAGAACATCATCTAAGAGATTATTTTGAGCAGTATGGGAAAATTGAAGTGATTGAAATCATGACGG
ACCGAGGCAGTGGCAAGAAGAGGGGCTTTGCTTTTGTTACTTTTGATGACCATGACTCCGTAGATAAGATTGTCATTCAG
AAATACCATACTGTGAATGGACACAACTGTGAAGTAAGGAAAGCCCTGTCAAAGCAAGAGATGGCCAGTGCTTCATCCAG
CCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGCGGCCGTGGAGGTGGTTTTGGTGGGAATGACAACTTTGGTCGTG
GAGGAAACTTCAGTGGGCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGAGGCAGTGGGGACGGTTATAAC
GGATTTGGTAATGACGGTGAGTATGGAGGAGGCGGTCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACA
GGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATAACAACGGAGGAGGCGGAGGCGGCTTTGGCGGTG
GTAGTGGTAGCAATTTTGGAGGTGGCGGAAGCTACAATGATTTTGGCAGTTACAACAATCAGTCTTCAAATTTTGGACCC
ATGAAGGGTGGAAACTTTGGAGGCAGAAGCTCTGGCCCTTATGGTGGTGGAGGTCAATACTTTGCCAAACCACGAAACCA
AGGTGGCTATGGCGGTTCAAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTTTAA

Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000009228 ortholog_one2many 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Loxodonta africana ENSLAFG00000001189 other_paralog 1 retrogene
retro_lafr_405,
Loxodonta africana ENSLAFG00000008612 other_paralog 1 retrogene
retro_lafr_650,
Loxodonta africana ENSLAFG00000016483 other_paralog 1 retrogene
retro_lafr_686,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Procavia capensis ENSPCAG00000001867 possible_ortholog 5 retrogenes
retro_pcap_111, retro_pcap_162, retro_pcap_377, retro_pcap_424, retro_pcap_435,
Pongo abelii ENSPPYG00000025850 possible_ortholog 4 retrogenes
retro_pabe_1765, retro_pabe_2285, retro_pabe_3492, retro_pabe_3835,
Ictidomys tridecemlineatus ENSSTOG00000006551 ortholog_one2one 8 retrogenes
retro_itri_1291, retro_itri_1567, retro_itri_190, retro_itri_354, retro_itri_439, retro_itri_446, retro_itri_456, retro_itri_515,
Tursiops truncatus ENSTTRG00000004505 ortholog_one2one 27 retrogenes
retro_ttru_1202, retro_ttru_1223, retro_ttru_1251, retro_ttru_1331, retro_ttru_1362, retro_ttru_156, retro_ttru_157, retro_ttru_1678, retro_ttru_1732, retro_ttru_1806, retro_ttru_1813, retro_ttru_1874, retro_ttru_221, retro_ttru_311, retro_ttru_479, retro_ttru_599, retro_ttru_605, retro_ttru_607, retro_ttru_620, retro_ttru_63, retro_ttru_678, retro_ttru_708, retro_ttru_812, retro_ttru_882, retro_ttru_902, retro_ttru_926, retro_ttru_981,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_192 77.25 71.96
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2. retro_lafr_747 85.46 69.78
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3. retro_lafr_961 70.63 77.88
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4. retro_lafr_1202 85.90 69.78
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5. retro_lafr_1208 91.63 62.62
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Download FASTA sequences of all ENSLAFG00000029587 retrocopies