Parental gene:

HNRNPA1L2, ENSSTOG00000006551

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393322.1:11481412..11484935(+)


>ENSSTOG00000006551
ATGTCTAAATCAGAGTCCCCTAAAGAGCCCGAACAGCTGCGGAAGCTATTCATCGGAGGGCTGAGCTTTGAAACAACTGA
TGAGAGTCTGAGAAGCCATTTTGAGCAATGGGGAACACTCACGGATTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGGTTTGTCACTTATGCCACTGTGGAGGAAGTGGATGCAGCCATGAATGCAAGACCACACAAAGTGGAT
GGTAGAGTTGTGGAACCAAAGAGAGCTGTCTCACGAGAAGATTCTCAAAGACCAGGGGCCCACTTAACTGTGAAAAAGAT
CTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTACGAGATTATTTTGAACAGTATGGGAAAATTGAAGTTA
TTGAAATCATGACTGACCGAGGCAGTGGAAAGAAAAGGGGCTTTGCTTTTGTAACTTTTGATGACCATGACTCTGTGGAT
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCAAAGCAAGAGATGGC
TAGTGCCTCATCTAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGTGGTGGTCGTGGAGGTGGTTTTGGTGGAAATG
ACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGTCGTGGTGGTGGTGGATATGGTGGCAGC
GGGGATGGCTACAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGG
CTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACG
GAGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGTAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAGTTAC
AACAATCAGTCATCAAATTTTGGACCCATGAAGGGTGGAAACTTTGGAGGCAGAAGCTCTGGACCTTACGGTGGTGGAGG
CCAATATTTTGCCAAACCACGAAACCAAGGTGGCTATGGTGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGT
TTTAA

Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000009228 ortholog_one2one 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Loxodonta africana ENSLAFG00000029587 ortholog_one2one 5 retrogenes
retro_lafr_1202, retro_lafr_1208, retro_lafr_192, retro_lafr_747, retro_lafr_961,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Ictidomys tridecemlineatus ENSSTOG00000006202 other_paralog 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Ictidomys tridecemlineatus ENSSTOG00000013979 other_paralog 1 retrogene
retro_itri_1177,
Ictidomys tridecemlineatus ENSSTOG00000025125 within_species_paralog 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Tursiops truncatus ENSTTRG00000004505 ortholog_one2one 27 retrogenes
retro_ttru_1202, retro_ttru_1223, retro_ttru_1251, retro_ttru_1331, retro_ttru_1362, retro_ttru_156, retro_ttru_157, retro_ttru_1678, retro_ttru_1732, retro_ttru_1806, retro_ttru_1813, retro_ttru_1874, retro_ttru_221, retro_ttru_311, retro_ttru_479, retro_ttru_599, retro_ttru_605, retro_ttru_607, retro_ttru_620, retro_ttru_63, retro_ttru_678, retro_ttru_708, retro_ttru_812, retro_ttru_882, retro_ttru_902, retro_ttru_926, retro_ttru_981,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_190 70.87 53.74
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_itri_354 75.16 80.75
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_itri_439 52.82 51.34
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_itri_446 74.15 53.48
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_itri_456 91.04 53.74
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_itri_515 73.71 66.04
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_itri_1291 86.27 53.74
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_itri_1567 92.16 54.01
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSTOG00000006551 retrocopies