Parental gene:

HNRNPA1L2, ENSTTRG00000004505

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_105794:15091..18614(-)


>ENSTTRG00000004505
ATGTCTAAGTCAGAGTCACCCAAAGAGCCCGAACAGCTGCGGAAGCTCTTCATCGGAGGTTTGAGCTTTGAAACAACCGA
TGAGAGTCTGAGGAGCCATTTTGAGCAGTGGGGAACGCTCACAGATTGTGTGGTAATGAGGGATCCAAACACCAAACGCT
CCAGAGGCTTCGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCGGCCATGAATGCAAGGCCACACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT
TTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCATCTAAGAGATTATTTTGAACAGTATGGGAAAATTGAAGTGA
TTGAAATCATGACTGACCGAGGCAGTGGCAAAAAGAGAGGCTTTGCTTTTGTAACCTTTGATGATCATGACTCTGTAGAC
AAGATTGTCATTCAGAAATACCACACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCCCTATCTAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGGAATG
ACAACTTTGGTCGTGGAGGAAACTTCAGCGGTCGAGGTGGCTTTGGTGGCAGCCGCGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTCGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTA
TGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGACAGCTATAACAACGGACGAGGCGGAG
GCGGCTTTGGCGGTGGTAGTGGTAGCAATTTTGGAGGTGGTGGAAGCTACAACGATTTTGGCAGTTACAACAATCAGTCT
TCAAATTTTGGACCCATGAAAGGAGGAAACTTTGGAGGCAGAAGTTCTGGCCCCTATGGTGGTGGAGGCCAATACTTTGC
CAAACCCCGAAACCAAGGTGGCTATGGTGGTTCCAGCAGCAGCAGTAGCCATGGCAGATGA

Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000009228 ortholog_one2one 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Loxodonta africana ENSLAFG00000029587 ortholog_one2one 5 retrogenes
retro_lafr_1202, retro_lafr_1208, retro_lafr_192, retro_lafr_747, retro_lafr_961,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2one 1 retrogene
retro_onil_38,
Ictidomys tridecemlineatus ENSSTOG00000006551 ortholog_one2one 8 retrogenes
retro_itri_1291, retro_itri_1567, retro_itri_190, retro_itri_354, retro_itri_439, retro_itri_446, retro_itri_456, retro_itri_515,
Tursiops truncatus ENSTTRG00000000709 other_paralog 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Tursiops truncatus ENSTTRG00000001793 other_paralog 2 retrogenes
retro_ttru_1486, retro_ttru_744,
Tursiops truncatus ENSTTRG00000007592 other_paralog 1 retrogene
retro_ttru_1913,
Tursiops truncatus ENSTTRG00000014225 within_species_paralog 3 retrogenes
retro_ttru_1459, retro_ttru_675, retro_ttru_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_63 83.53 67.49
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2. retro_ttru_156 76.21 84.43
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3. retro_ttru_157 90.09 57.92
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4. retro_ttru_221 98.04 69.67
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5. retro_ttru_311 87.25 68.31
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6. retro_ttru_479 83.07 68.85
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7. retro_ttru_599 81.12 67.76
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8. retro_ttru_605 89.11 67.49
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9. retro_ttru_607 87.89 69.67
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10. retro_ttru_620 84.58 58.47
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11. retro_ttru_678 91.02 69.67
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12. retro_ttru_708 85.88 69.67
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13. retro_ttru_812 87.50 60.66
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14. retro_ttru_882 84.65 61.75
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15. retro_ttru_902 84.10 53.01
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16. retro_ttru_926 77.26 80.87
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17. retro_ttru_981 84.71 69.67
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18. retro_ttru_1202 87.05 60.38
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19. retro_ttru_1223 83.93 60.93
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20. retro_ttru_1251 63.23 59.29
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21. retro_ttru_1331 75.39 69.67
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22. retro_ttru_1362 99.67 83.33
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23. retro_ttru_1678 93.05 82.51
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24. retro_ttru_1732 85.98 58.47
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25. retro_ttru_1806 97.25 69.67
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26. retro_ttru_1813 83.20 69.67
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27. retro_ttru_1874 77.78 66.39
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Download FASTA sequences of all ENSTTRG00000004505 retrocopies