Parental gene:

Smarce1, ENSMUSG00000037935

Aliases:Smarce1, 2810417B20Rik, 5830412H02Rik, 9030408N19Rik, Baf27
Description:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:MGI Symbol;Acc:MGI:1927347]
Organism:Mouse (Mus musculus)
Coordinates:11:99209046..99231017(-)


>ENSMUSG00000037935
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCGT
CCTCTGGCATTACGATTCCAAAGCCTCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACTGATGAAGAGAAGCAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAGTCTATGAAGGCCTACC
ATAATTCCCCTGCGTACCTTGCCTATATTAATGCAAAAAGTCGTGCGGAAGCTGCATTAGAGGAAGAAAGTCGACAGAGA
CAGTCTCGCATGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAGGATCCAGACGACTATGATGATGGCTTTTC
AATGAAGCACACAGCCACTGCCCGTTTCCAGAGAAACCACCGTCTCATCAGTGAGATCCTCAGTGAGAGTGTGGTACCTG
ATGTGCGGTCGGTTGTCACAACAGCTAGAATGCAGGTCCTCAAGCGACAGGTCCAGTCTTTAATGGTTCATCAGCGGAAA
CTAGAAGCCGAGCTCCTTCAGATAGAGGAACGACACCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACGGACTCCTTTAA
CAATGAACTTAAAAGGTTATGTGGTCTGAAGGTGGAAGTAGACATGGAGAAGATTGCGGCTGAGATCGCACAGGCGGAGG
AACAAGCCCGCAAGAGGCAAGAGGAGAGGGAGAAGGAGGCAGCAGAGCAGGCTGAGCGCAGTCAGAGCAGCATGGCCCCT
GAGGAAGAGCAAGTGGCGAACAAAGCCGAGGAGAAGAAAGATGAGGAGAGCATCCCGATGGAGACAGAGGAGACACACCT
TGAAGACACAGCAGAGAGCCAGCAGAATGGTGAAGAAGGCACGTCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGG
TTGACAGCATGGAGGTGGAAGGGACCAGTGACAGTAACACGGGCTCAGAGAGCAACAGCGCCACAGTGGAGGAGCCGCCC
ACAGACCCAGTGCCAGAAGACGAGAAGAAGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain 25 .56 RPM
SRP007412_cerebellum 30 .70 RPM
SRP007412_heart 35 .24 RPM
SRP007412_kidney 33 .34 RPM
SRP007412_liver 17 .45 RPM
SRP007412_testis 35 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000013573 ortholog_one2many 4 retrogenes
retro_cjac_1107, retro_cjac_2109, retro_cjac_50, retro_cjac_854,
Homo sapiens ENSG00000073584 ortholog_one2one 5 retrogenes
retro_hsap_1195, retro_hsap_1304, retro_hsap_3623, retro_hsap_3947, retro_hsap_922,
Gorilla gorilla ENSGGOG00000011803 ortholog_one2many 2 retrogenes
retro_ggor_1020, retro_ggor_931,
Microcebus murinus ENSMICG00000009821 ortholog_one2one 4 retrogenes
retro_mmur_1408, retro_mmur_1592, retro_mmur_608, retro_mmur_928,
Myotis lucifugus ENSMLUG00000004609 ortholog_one2one 1 retrogene
retro_mluc_1209,
Macaca mulatta ENSMMUG00000004005 ortholog_one2many 3 retrogenes
retro_mmul_1284, retro_mmul_2159, retro_mmul_2286,
Mustela putorius furo ENSMPUG00000014660 possible_ortholog 4 retrogenes
retro_mputfur_1411, retro_mputfur_1482, retro_mputfur_1499, retro_mputfur_739,
Nomascus leucogenys ENSNLEG00000001957 ortholog_one2one 4 retrogenes
retro_nleu_1060, retro_nleu_2051, retro_nleu_2083, retro_nleu_286,
Oryctolagus cuniculus ENSOCUG00000008981 possible_ortholog 1 retrogene
retro_ocun_59,
Otolemur garnettii ENSOGAG00000001652 ortholog_one2one 7 retrogenes
retro_ogar_1734, retro_ogar_2059, retro_ogar_3199, retro_ogar_402, retro_ogar_454, retro_ogar_682, retro_ogar_760,
Ochotona princeps ENSOPRG00000000985 ortholog_one2one 1 retrogene
retro_opri_731,
Pongo abelii ENSPPYG00000008456 ortholog_one2many 4 retrogenes
retro_pabe_2973, retro_pabe_3251, retro_pabe_794, retro_pabe_994,
Pan troglodytes ENSPTRG00000022902 ortholog_one2one 5 retrogenes
retro_ptro_2451, retro_ptro_2678, retro_ptro_3039, retro_ptro_639, retro_ptro_894,
Pteropus vampyrus ENSPVAG00000011355 ortholog_one2one 1 retrogene
retro_pvam_237,
Rattus norvegicus ENSRNOG00000010676 ortholog_one2one 7 retrogenes
retro_rnor_1278, retro_rnor_1311, retro_rnor_1456, retro_rnor_1507, retro_rnor_1599, retro_rnor_2383, retro_rnor_2593,
Tupaia belangeri ENSTBEG00000000770 ortholog_one2one 10 retrogenes
retro_tbel_1246, retro_tbel_1554, retro_tbel_2208, retro_tbel_2955, retro_tbel_4035, retro_tbel_4629, retro_tbel_4656, retro_tbel_658, retro_tbel_821, retro_tbel_844,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1111 96.15 69.59
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2. retro_mmus_1127 79.56 87.83
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3. retro_mmus_2437 78.11 72.02
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4. retro_mmus_2618 98.54 100.00
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5. retro_mmus_3194 98.04 87.10
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Download FASTA sequences of all ENSMUSG00000037935 retrocopies