RetrogeneDB ID: | retro_pvam_237 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_2064:35621..36310(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMARCE1 | ||
Ensembl ID: | ENSPVAG00000011355 | ||
Aliases: | None | ||
Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
Percent Identity: | 73.73 % |
Parental protein coverage: | 57.32 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDY |
QEYLN.Y..E..EY...MKAYHNSP.Y......KS.AEAAL.E....RQS.MEKGE.YMSIQP.E.PDDY | |
Retrocopy | QEYLNKYRVENREYH*FMKAYHNSPTYHTKLQ-KSPAEAALKEK---RQSWMEKGESYMSIQPSENPDDY |
Parental | DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERH |
DDGFSMK.TAT..F.RNH.L.SEILSES.VP.V.S.VTTARMQ.LK..V.SL.VHQ.KLE.E.LQIEE.H | |
Retrocopy | DDGFSMKLTATTHFLRNHHLFSEILSESMVPNVWSIVTTARMQALKQWV*SLNVHQ*KLEGE-LQIEEQH |
Parental | QEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQEE-REKEAAEQAERSQSGIAPE |
QEKKRKFL.STDSF..ELK.LC.LKVEV.MEKIAAEIAQAEEQA.KRQ.E.REKEAAEQAE.SQ..IA.E | |
Retrocopy | QEKKRKFLGSTDSFKDELKSLCSLKVEVNMEKIAAEIAQAEEQACKRQME<REKEAAEQAECSQNSIAAE |
Parental | EEQAASKTEEKKEDENIPVETEETHL |
EEQAA.KT.EKKE.ENIP.E.EETHL | |
Retrocopy | EEQAANKTKEKKENENIPMESEETHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013573 | 4 retrocopies | |
Homo sapiens | ENSG00000073584 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000011803 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000009821 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000004609 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004005 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000014660 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037935 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001957 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008981 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001652 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000000985 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008456 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000022902 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011355 | 1 retrocopy |
retro_pvam_237 ,
|
Rattus norvegicus | ENSRNOG00000010676 | 7 retrocopies | |
Tupaia belangeri | ENSTBEG00000000770 | 10 retrocopies |