Parental gene:

SMARCE1, ENSPTRG00000022902

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:16718130..16738996(+)


>ENSPTRG00000022902
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCAT
CCTCTGGTATCACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATC
ATAATTCCCCCGCGTACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGA
CAATCTCGCATGGAGAAAGGAGAACCGTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTC
AATGAAGCATACAGCCACCGCCCGTTTCCAGAGAAACCACCGCCTCATCAGTGAAATTCTTAGTGAGAGTGTGGTGCCAG
ACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGGCAGGTCCAGTCCTTAATGGTTCATCAGCGAAAA
CTAGAAGCTGAACTTCTTCAAATAGAGGAACGACACCAGGAGAAGAAGAGGAAATTCCTGGAAAGCACAGATTCATTTAA
CAATGAACTTAAAAGGTTGTGCGGTCTGAAAGTAGAAGTGGATATGGAGAAAATTGCAGCTGAGATTGCACAGGCAGAGG
AACAGGCCCGCAAAAGGCAGGAGGAAAGGGAGAAGGAGGCCGCAGAGCAGGCTGAGCGCAGTCAGAGCAGCATCGTTCCT
GAGGAAGAACAAGCAGCCAACAAAGGCGAGGAGAAGAAAGACGACGAGAACATTCCGATGGAGACAGAGGAGACACACCT
TGAAGAAACAACAGAGAGCCAACAGAATGGTGAAGAAGGCACGTCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGAG
TCGACAGTATGGCAGAGGAAGGAACCAGTGATAGTAACACTGGCTCGGAGAGCAACAGTGCAACAGTGGAGGAGCCACCA
ACAGATCCCATACCAGAAGATGAGAAAAAAGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 27 .08 RPM
SRP007412_cerebellum 47 .28 RPM
SRP007412_heart 54 .65 RPM
SRP007412_kidney 72 .94 RPM
SRP007412_liver 56 .47 RPM
SRP007412_testis 104 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000013573 ortholog_one2many 4 retrogenes
retro_cjac_1107, retro_cjac_2109, retro_cjac_50, retro_cjac_854,
Homo sapiens ENSG00000073584 ortholog_one2one 5 retrogenes
retro_hsap_1195, retro_hsap_1304, retro_hsap_3623, retro_hsap_3947, retro_hsap_922,
Gorilla gorilla ENSGGOG00000011803 ortholog_one2one 2 retrogenes
retro_ggor_1020, retro_ggor_931,
Microcebus murinus ENSMICG00000009821 ortholog_one2one 4 retrogenes
retro_mmur_1408, retro_mmur_1592, retro_mmur_608, retro_mmur_928,
Myotis lucifugus ENSMLUG00000004609 ortholog_one2one 1 retrogene
retro_mluc_1209,
Macaca mulatta ENSMMUG00000004005 ortholog_one2one 3 retrogenes
retro_mmul_1284, retro_mmul_2159, retro_mmul_2286,
Mustela putorius furo ENSMPUG00000014660 possible_ortholog 4 retrogenes
retro_mputfur_1411, retro_mputfur_1482, retro_mputfur_1499, retro_mputfur_739,
Mus musculus ENSMUSG00000037935 ortholog_one2one 5 retrogenes
retro_mmus_1111, retro_mmus_1127, retro_mmus_2437, retro_mmus_2618, retro_mmus_3194,
Nomascus leucogenys ENSNLEG00000001957 ortholog_one2one 4 retrogenes
retro_nleu_1060, retro_nleu_2051, retro_nleu_2083, retro_nleu_286,
Oryctolagus cuniculus ENSOCUG00000008981 possible_ortholog 1 retrogene
retro_ocun_59,
Otolemur garnettii ENSOGAG00000001652 ortholog_one2one 7 retrogenes
retro_ogar_1734, retro_ogar_2059, retro_ogar_3199, retro_ogar_402, retro_ogar_454, retro_ogar_682, retro_ogar_760,
Ochotona princeps ENSOPRG00000000985 ortholog_one2one 1 retrogene
retro_opri_731,
Pongo abelii ENSPPYG00000008456 ortholog_one2one 4 retrogenes
retro_pabe_2973, retro_pabe_3251, retro_pabe_794, retro_pabe_994,
Pteropus vampyrus ENSPVAG00000011355 ortholog_one2one 1 retrogene
retro_pvam_237,
Rattus norvegicus ENSRNOG00000010676 ortholog_one2one 7 retrogenes
retro_rnor_1278, retro_rnor_1311, retro_rnor_1456, retro_rnor_1507, retro_rnor_1599, retro_rnor_2383, retro_rnor_2593,
Tupaia belangeri ENSTBEG00000000770 ortholog_one2one 10 retrogenes
retro_tbel_1246, retro_tbel_1554, retro_tbel_2208, retro_tbel_2955, retro_tbel_4035, retro_tbel_4629, retro_tbel_4656, retro_tbel_658, retro_tbel_821, retro_tbel_844,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_639 84.11 51.82
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2. retro_ptro_894 83.86 54.01
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3. retro_ptro_2451 77.16 100.00
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4. retro_ptro_2678 83.45 99.27
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5. retro_ptro_3039 89.32 100.00
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Download FASTA sequences of all ENSPTRG00000022902 retrocopies