Parental gene: | SMARCE1, ENSOGAG00000001652 |
| Aliases: | None |
| Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
| Organism: | Bushbaby (Otolemur garnettii) |
| Coordinates: | GL873537.1:23388293..23408579(+) |
>ENSOGAG00000001652
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCAT
CCTCTGGTATTACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAGGCTTCTAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACCGATGAAGAGAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAATACAATGAATCTATGAAGGCCTATC
ATAATTCCCCCGCATACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGA
CAGTCTCGCATGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTC
AATGAAGCATACAGCCACTGCCCGTTTCCAGAGAAACCACCGCCTCATTAGTGAAATTCTTAGTGAGAGTGTGGTGCCAG
ACGTTCGGTCAGTTGTCACAACAGCTAGGATGCAGGTCCTCAAACGACAGGTCCAATCTTTAATGGTCCATCAGCGAAAA
CTAGAAGCTGAACTTCTTCAAATAGAGGAACGACATCAAGAAAAGAAGAGGAAATTTCTGGAAAGCACAGATTCATTTAA
CAATGAACTTAAAAGGTTGTGCGGTCTGAAGGTAGAAGTGGATATGGAGAAGATCGCCGCCGAGATTGCGCAGGCAGAGG
AGCAGGCCCGCAAGAGGCAAGAGGAGAGGGAAAAGGAGGCAGCCGAGCAGGCCGAGCGCAGTCAGAGCAGCATCGTCCCC
GAGGAGGAGCAAGCGGCGAGCAAAGCTGAGGAAAAGAAAGACGATGAGAACATTCCAATGGAGACAGAGGAGACACACCT
TGAAGAAACAACAGAGAGCCAGCAGAATGGTGAAGAAGGCACATCAACTCCTGACGACAAGGAGAGTGGGCAGGAGGGGG
TCGACAGCATGGCTGAGGAAGGAACCAGTGATAGCAACACCGGCTCAGAGAGCAACAGTGCCACAGTGGAGGAGCCACCG
ACAGATCCCATACCAGAAGATGAGAAAAAAGAATAG
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCAT
CCTCTGGTATTACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAGGCTTCTAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACCGATGAAGAGAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAATACAATGAATCTATGAAGGCCTATC
ATAATTCCCCCGCATACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGA
CAGTCTCGCATGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTC
AATGAAGCATACAGCCACTGCCCGTTTCCAGAGAAACCACCGCCTCATTAGTGAAATTCTTAGTGAGAGTGTGGTGCCAG
ACGTTCGGTCAGTTGTCACAACAGCTAGGATGCAGGTCCTCAAACGACAGGTCCAATCTTTAATGGTCCATCAGCGAAAA
CTAGAAGCTGAACTTCTTCAAATAGAGGAACGACATCAAGAAAAGAAGAGGAAATTTCTGGAAAGCACAGATTCATTTAA
CAATGAACTTAAAAGGTTGTGCGGTCTGAAGGTAGAAGTGGATATGGAGAAGATCGCCGCCGAGATTGCGCAGGCAGAGG
AGCAGGCCCGCAAGAGGCAAGAGGAGAGGGAAAAGGAGGCAGCCGAGCAGGCCGAGCGCAGTCAGAGCAGCATCGTCCCC
GAGGAGGAGCAAGCGGCGAGCAAAGCTGAGGAAAAGAAAGACGATGAGAACATTCCAATGGAGACAGAGGAGACACACCT
TGAAGAAACAACAGAGAGCCAGCAGAATGGTGAAGAAGGCACATCAACTCCTGACGACAAGGAGAGTGGGCAGGAGGGGG
TCGACAGCATGGCTGAGGAAGGAACCAGTGATAGCAACACCGGCTCAGAGAGCAACAGTGCCACAGTGGAGGAGCCACCG
ACAGATCCCATACCAGAAGATGAGAAAAAAGAATAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000013573 | ortholog_one2many | 4 retrogenes | |
| Homo sapiens | ENSG00000073584 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011803 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000009821 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000004609 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004005 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014660 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000037935 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001957 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008981 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000000985 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008456 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000022902 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000011355 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000010676 | ortholog_one2one | 7 retrogenes | |
| Tupaia belangeri | ENSTBEG00000000770 | ortholog_one2one | 10 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ogar_402 | 71.21 | 80.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ogar_454 | 91.55 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ogar_682 | 72.04 | 94.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ogar_760 | 92.75 | 99.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ogar_1734 | 77.45 | 88.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ogar_2059 | 96.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ogar_3199 | 84.76 | 50.36 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOGAG00000001652 retrocopies