Parental gene:

HNRNPH3, ENSOCUG00000004443

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:18:18305472..18309873(-)


>ENSOCUG00000004443
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTACCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAGGGATTTTATGATCCACCAAGAAGATTGCT
GGGACAGCGACCGGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGCTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTATGGC
TATGGAAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGCTATGGTGGGGCTGGTGATGC
AAGTTCAGGTTTTCATGGTGGTCATTTTGTGCATATGAGAGGCCTGCCTTTTCGTGCAACTGAAAATGACATTGCTAATT
TCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCAACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAATATGCAACATCGATACATTGAACTCTTCTT
GAATTCTACTCCTGGCGGTGGCTCTGGAATGGGAGGTTCTGGAATGGGAGGCTACGGCAGAGATGGAATGGATAATCAAG
GAGGATATGGATCTGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGATTGGGTGGT
TATGGCCGTGGTGGTGGAGGCAGTGGAGGTTACTATGGGCAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTG
A

Library Parental gene expression (RPM)
SRP017611_brain 148 .90 RPM
SRP017611_kidney 143 .93 RPM
SRP017611_liver 117 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010365 ortholog_one2one 1 retrogene
retro_acar_184,
Ailuropoda melanoleuca ENSAMEG00000018064 ortholog_one2one 1 retrogene
retro_amel_1375,
Bos taurus ENSBTAG00000014316 ortholog_one2one 2 retrogenes
retro_btau_1504, retro_btau_470,
Callithrix jacchus ENSCJAG00000019154 ortholog_one2many 2 retrogenes
retro_cjac_292, retro_cjac_578,
Equus caballus ENSECAG00000007190 ortholog_one2one 1 retrogene
retro_ecab_912,
Gallus gallus ENSGALG00000003947 ortholog_one2one 1 retrogene
retro_ggal_16,
Macropus eugenii ENSMEUG00000013139 ortholog_one2one 1 retrogene
retro_meug_1627,
Mustela putorius furo ENSMPUG00000011997 ortholog_one2one 1 retrogene
retro_mputfur_1469,
Tursiops truncatus ENSTTRG00000013322 ortholog_one2one 2 retrogenes
retro_ttru_1744, retro_ttru_1766,
Vicugna pacos ENSVPAG00000011814 ortholog_one2one 1 retrogene
retro_vpac_403,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1136 77.67 61.56
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2. retro_ocun_1379 90.61 52.31
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3. retro_ocun_1615 78.24 55.78
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Download FASTA sequences of all ENSOCUG00000004443 retrocopies