RetrogeneDB ID: retro_mputfur_1469

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897150.1:168361..168897(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HNRNPH3
• Ensembl ID: ENSMPUG00000011997
• Aliases: None
• Description: heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043]

Sequence

>retro_mputfur_1469
GGAAGTTATGGAGGTTTTGCTGACTATGGTGTCTATAATAATTATGGCTACAGAAATGATGGCTTTGATGACAGAATGAA
TGGAAAAGATATGGGAGGGCATGGCTATGGTGGAGCTGGTGATGCAAGTTCGGGTTTTCATGGTGGTCATTTTGTACATA
TGAGAGGATTACCTTTTCATGCAACTGAAAATGACATTGCTAATTTCTTCTCACCACTAAATCTATTAAGAGTGCATAGT
GATATTGGAGCTGATGGCGGAGCAACAGGAGAGGTAGATGTAGAATTTGTGACACATGAAGATGCTCTAGCTGCCATGTC
TAATGATAAGAATAACATGCAACATCGGTACATTGAACTCTTCTTGAATTCTACTCCTGGGGGCTGTTCTGGAATGGGAG
GTTCTGGAATGGGAGGCTATGGCAGAGATGGAATGGATAATCAGGGAGGTTATGGATCTTTTGGAAGAATGGGAATGGGT
AACAATTAAGTGGAAGATATGGTGGTACTCCTGATGGCTTGGGTGGTTATGGCCGT

Alignment

ORF - retro_mputfur_1469 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.77 %
• Parental protein coverage: 50.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANF
          G.YGGF.DYG.YNNYGY.NDGFDDRM..G..MGGHGYGGAGDASSGFHGGHFVHMRGLPF.ATENDIANF
Retrocopy GSYGGFADYGVYNNYGYRNDGFDDRM-NGKDMGGHGYGGAGDASSGFHGGHFVHMRGLPFHATENDIANF

Parental  FSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGG
          FSPLN..RVH.DIGADG.ATGE.DVEFVTHEDA.AAMS.DKNNMQHRYIELFLNSTPGG...........
Retrocopy FSPLNLLRVHSDIGADGGATGEVDVEFVTHEDALAAMSNDKNNMQHRYIELFLNSTPGGXXXXXXXXXXX

Parental  YGRDGMDNQGGYGSVGRMGMGNN-YSGGY-GTPDGLGGYGK
          YGRDGMDNQGGYGS.GRMGMGNN..SG.Y.GTPDGLGGYG.
Retrocopy YGRDGMDNQGGYGSFGRMGMGNN<LSGRYGGTPDGLGGYGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1469 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1469 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000010365	1 retrocopy	retro_acar_184,
Ailuropoda melanoleuca	ENSAMEG00000018064	1 retrocopy	retro_amel_1375,
Bos taurus	ENSBTAG00000014316	2 retrocopies	retro_btau_1504, retro_btau_470,
Callithrix jacchus	ENSCJAG00000019154	2 retrocopies	retro_cjac_292, retro_cjac_578,
Equus caballus	ENSECAG00000007190	1 retrocopy	retro_ecab_912,
Gallus gallus	ENSGALG00000003947	1 retrocopy	retro_ggal_16,
Macropus eugenii	ENSMEUG00000013139	1 retrocopy	retro_meug_1627,
Mustela putorius furo	ENSMPUG00000000693	1 retrocopy	retro_mputfur_156,
Mustela putorius furo	ENSMPUG00000011997	1 retrocopy	retro_mputfur_1469 ,
Oryctolagus cuniculus	ENSOCUG00000004443	3 retrocopies	retro_ocun_1136, retro_ocun_1379, retro_ocun_1615,
Tursiops truncatus	ENSTTRG00000013322	2 retrocopies	retro_ttru_1744, retro_ttru_1766,
Vicugna pacos	ENSVPAG00000011814	1 retrocopy	retro_vpac_403,