Parental gene:

HNRNPH3, ENSBTAG00000014316

Aliases:HNRNPH3, HNRPH3
Description:heterogeneous nuclear ribonucleoprotein H3 [Source:RefSeq peptide;Acc:NP_001193508]
Organism:Cow (Bos taurus)
Coordinates:28:24904445..24915401(+)


>ENSBTAG00000014316
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTGCCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCT
GGGCCAGCGACCAGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTATGGC
TATGGAAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGTTATGGTGGAGCTGGTGATGC
AAGTTCGGGTTTTCATGGTGGTCATTTTGTACATATGAGAGGACTGCCTTTTCGTGCAACTGAAAATGATATTGCTAATT
TCTTCTCACCACTAAATCCAATCCGAGTACATATTGATATTGGAGCTGATGGCAGAGCAACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGCAACATCGATACATCGAACTTTTCTT
GAATTCAACTCCTGGAGGCGGCTCTGGAATGGGAGGTTCTGGAATGGGAGGCTACGGCAGAGATGGAATGGATAATCAGG
GAGGCTATGGATCTGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGCTTGGGTGGT
TACGGCCGTGGTGGTGGAGGCAGTGGCGGTTATTATGGGCAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTA
A

Library Parental gene expression (RPM)
ERP005899_liver 86 .95 RPM
ERP005899_muscle 66 .46 RPM
SRP017611_brain 99 .49 RPM
SRP017611_kidney 115 .34 RPM
SRP017611_liver 34 .73 RPM
SRP030211_testis 177 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010365 ortholog_one2many 1 retrogene
retro_acar_184,
Ailuropoda melanoleuca ENSAMEG00000018064 ortholog_one2one 1 retrogene
retro_amel_1375,
Bos taurus ENSBTAG00000009389 within_species_paralog 1 retrogene
retro_btau_130,
Bos taurus ENSBTAG00000020513 within_species_paralog 1 retrogene
retro_btau_42,
Bos taurus ENSBTAG00000021838 other_paralog 1 retrogene
retro_btau_847,
Callithrix jacchus ENSCJAG00000019154 ortholog_one2many 2 retrogenes
retro_cjac_292, retro_cjac_578,
Equus caballus ENSECAG00000007190 ortholog_one2one 1 retrogene
retro_ecab_912,
Gallus gallus ENSGALG00000003947 ortholog_one2many 1 retrogene
retro_ggal_16,
Macropus eugenii ENSMEUG00000013139 ortholog_one2many 1 retrogene
retro_meug_1627,
Mustela putorius furo ENSMPUG00000011997 ortholog_one2one 1 retrogene
retro_mputfur_1469,
Oryctolagus cuniculus ENSOCUG00000004443 ortholog_one2one 3 retrogenes
retro_ocun_1136, retro_ocun_1379, retro_ocun_1615,
Ictidomys tridecemlineatus ENSSTOG00000011676 possible_ortholog 1 retrogene
retro_itri_647,
Tursiops truncatus ENSTTRG00000013322 ortholog_one2one 2 retrogenes
retro_ttru_1744, retro_ttru_1766,
Vicugna pacos ENSVPAG00000011814 ortholog_one2one 1 retrogene
retro_vpac_403,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_470 61.78 54.62
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2. retro_btau_1504 78.17 72.25
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Download FASTA sequences of all ENSBTAG00000014316 retrocopies