Parental gene: | ENSCJAG00000019154 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:55939067..55951110(-) |
>ENSCJAG00000019154
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTACCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCT
GGGACAGCGACCGGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTACGGC
TATGGGAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGCTATGGCGGAGCCGGTGATGC
AAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGACATTGCTAATT
TCTTCTCACCATTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTGGCTGCCATGTCTAAAGATAAGAATAACATGCAGCATCGATACATTGAACTCTTCTT
GAATTCTACTCCTGGAGGTGGCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTATGGAAGAGATGGAATGGATAATCAGG
GAGGTTATGGATCAGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGCTTGGGTGGT
TATGGCCGTGGTGGTGGAGGCAGTGGAGGTTACTATGGACAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTG
A
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTACCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCT
GGGACAGCGACCGGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTACGGC
TATGGGAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGCTATGGCGGAGCCGGTGATGC
AAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGACATTGCTAATT
TCTTCTCACCATTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTGGCTGCCATGTCTAAAGATAAGAATAACATGCAGCATCGATACATTGAACTCTTCTT
GAATTCTACTCCTGGAGGTGGCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTATGGAAGAGATGGAATGGATAATCAGG
GAGGTTATGGATCAGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGCTTGGGTGGT
TATGGCCGTGGTGGTGGAGGCAGTGGAGGTTACTATGGACAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTG
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 32 .82 RPM |
| SRP051959_skeletal_muscle | 13 .61 RPM |
| SRP051959_lymph_node | 38 .93 RPM |
| SRP051959_lung | 34 .32 RPM |
| SRP051959_liver | 15 .92 RPM |
| SRP051959_kidney | 24 .69 RPM |
| SRP051959_heart | 28 .63 RPM |
| SRP051959_colon | 19 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000010365 | ortholog_one2many | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000018064 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000014316 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009931 | within_species_paralog | 1 retrogene | |
| Equus caballus | ENSECAG00000007190 | ortholog_one2many | 1 retrogene | |
| Gallus gallus | ENSGALG00000003947 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013139 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011997 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004443 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000011676 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013322 | ortholog_one2many | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000011814 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_292 | 97.03 | 93.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_578 | 93.82 | 51.45 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019154 retrocopies