Parental gene:

HNRNPA2B1, ENSOGAG00000015353

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873547.1:8383673..8391718(-)


>ENSOGAG00000015353
ATGGAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAACTCTTTATTGGTGG
CTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGAAACTACTACGAGCAATGGGGCAAACTTACAGACTGTGTGGTAATGA
GAGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTCTCATCCATGGCTGAGGTTGATGCTGCCATGGCT
GCAAGACCTCATTCAATTGATGGGAGAGTGGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAGTCTGGAAAACCAGGGGC
TCATGTAACTGTGAAGAAACTGTTTGTTGGTGGAATTAAAGAAGATACTGAGGAGCATCACCTTAGAGATTACTTTGAGG
AGTATGGAAAAATTGATACCATTGAGATAATTACCGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTT
GATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAACGGTCATAATGCAGAAGTAAGAAAGGC
TTTGTCTAGACAAGAAATGCAGGAAGTTCAGAGTTCTAGGAGTGGAAGAGGAGGCAACTTTGGTTTTGGAGATTCACGTG
GTGGTGGTGGAAATTTTGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCTGATGGATATGGAAGTGGACGTGGATTT
GGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGG
AGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAA
ATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTATGGTCCAATGAAGAGTGGAAAC
TTTGGTGGTAGCAGGAACATGGGTGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTA
TGGTGGGAGGAGCCGATATTGA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Callithrix jacchus ENSCJAG00000007908 ortholog_one2one 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 possible_ortholog 1 retrogene
retro_mluc_34,
Otolemur garnettii ENSOGAG00000002501 within_species_paralog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Otolemur garnettii ENSOGAG00000025948 other_paralog 3 retrogenes
retro_ogar_1685, retro_ogar_3010, retro_ogar_3175,
Otolemur garnettii ENSOGAG00000028132 other_paralog 7 retrogenes
retro_ogar_1869, retro_ogar_1924, retro_ogar_2222, retro_ogar_2590, retro_ogar_3215, retro_ogar_600, retro_ogar_814,
Otolemur garnettii ENSOGAG00000029707 other_paralog 3 retrogenes
retro_ogar_1721, retro_ogar_205, retro_ogar_2321,
Otolemur garnettii ENSOGAG00000030251 within_species_paralog 2 retrogenes
retro_ogar_3509, retro_ogar_385,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Rattus norvegicus ENSRNOG00000011175 ortholog_one2one 3 retrogenes
retro_rnor_1824, retro_rnor_2043, retro_rnor_2339,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ogar_1384 65.66 54.39
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2. retro_ogar_3077 55.56 88.10
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3. retro_ogar_3189 90.00 56.66
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Download FASTA sequences of all ENSOGAG00000015353 retrocopies