Parental gene:

HNRNPA2B1, ENSOPRG00000011698

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_192:146759..152888(-)


>ENSOPRG00000011698
GCGGCAGTAGCAGCGGCGCCGGGTCCGGGGTGGAGGTGCTGCCGGTGGGGTTGTTTCTCGAGCAGCGGCGGCTCTCCGTA
CGGCGCCAGGACGAGTCCGGCTCGTGTTCGTCCGCGGAAATCTCTCTCGTCTCGCTCGGCTGCGGGCAATCGGGCTGAAG
CGACTGAGTCCGCGATGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCATGAGGGATCCTGGAAGCAAAAGATC
CCGGGGATTTGGCTTTGTAACTTTCTCATCTATGGCCGAGGTTGATGCTGCCATGGCTGCAAGGCCTCATTCCATCGATG
GGAGAGTGGTCGAGCCGAAGCGTGCTGTAGCCAGAGAAGAATCTGGAAAACCTGGGGCTCATGTCACAGTGAAGAAGCTG
TTTGTTGGTGGAATTAAGGAAGACACTGAGGAACATCACCTTAGAGATTACTTTGAAGAATATGGGAAAATTGATACTAT
TGAAATCATCACTGATAGGCAGTCTGGAAAGAAAAGGGGCTTTGGCTTTGTTACCTTTGACGACCACGACCCCGTGGACA
AGATTGTGTTGCAAAAATATCACACCATCAATGGTCATAATGCGGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAA
GAAGTCCAAAGTTCTAGGAGTGGAAGAGGAGGTAACTTTGGTTTTGGAGATTCACGTGGTGGTGGTGGGAATTTTGGACC
GGGACCAGGAAGTAATTTTAGAGGGTCTGATGGATATGGGAGTGGACGTGGATTTGGAGATGGCTATAACGGGTATGGAG
GAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGCTATGGTGGCGGAGGACCTGGA
TATGGCAGCCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGGAATTATGGAAGTGGAAATTACAATGA
TTTTGGAAATTATAATCAGCAACCTTCTAACTACGGCCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGG
GACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATATTGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Callithrix jacchus ENSCJAG00000007908 ortholog_one2one 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2many 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Otolemur garnettii ENSOGAG00000015353 ortholog_one2one 3 retrogenes
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189,
Ochotona princeps ENSOPRG00000006107 other_paralog 10 retrogenes
retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Ochotona princeps ENSOPRG00000007178 within_species_paralog 3 retrogenes
retro_opri_1075, retro_opri_623, retro_opri_703,
Rattus norvegicus ENSRNOG00000011175 ortholog_one2one 3 retrogenes
retro_rnor_1824, retro_rnor_2043, retro_rnor_2339,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_165 66.39 58.29
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2. retro_opri_893 66.39 58.29
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Download FASTA sequences of all ENSOPRG00000011698 retrocopies