Parental gene:

CSA.5848, ENSCSAVG00000000472

Aliases:None
Description:None
Organism:Pacific transparent sea squirt (Ciona savignyi)
Coordinates:reftig_5:562155..566053(-)


>ENSCSAVG00000000472
ATGCCGTTCAAAAGTGGTTCAGAAGAGGAGCAATTGAGGAAACTGTTTATCGGTGGCATATCTTATGAGACAACTGATGA
ATCTATGAATGATTATTTTTCAAAATATGGTAAAATAGAGGATTGTGTTGTCATAAAGGACAACAGCACCGGACGATCAA
AGGGATTTGGATTTGTTACGTTTGAAACTGAAACCGAGGCAGACGCATGCATGGAAGAGCGGCCACACACTTTAAACAAC
CGACAGATTGATGTGAAACGTGCAGTTTCTAGAGAAGAATCAGCCAAGCCAGGTGCACATTTTCAAGTCAAAAAGATTTT
TATCGGCGGTCTTAAAGATGGATGTGATGAATCGAGTCTAAAAGAGTACTTTGGCAAGATTGGGTCGATAGAGACGTTTG
AACTTCCTTTGGAACGAGACAGTGATAAACCGAGGGGATTTGCATTCATTACTTTTACTGATCATGACACGGTAGACAAA
CTTGTTGCAAAAAGACACCACTATGTTAATGGAGTTCGATGTGAGGTTAAAAAAGCACTATCTAAATCTGAAATGGAAAA
GGCAAAATCCCAAGTTGAGTCGAAGCGACATTATGGTGGAAGTGGTGGCGGCGGCGGCAGAGGTGGGGGTTCAAGAAATG
GTGATTCTTACAAGAGCTATGGAGGATATAACAGCTCCAGAGGTTCTGGTGGCTATGGAGGAGGAGGCGGCTATGGAGAT
GAGGGTTATGGACATCACGGTGGGTATGAGGATTATGACGAAGGTTATGGGTACGACACCGGGTACGGCTACAGCAATTC
AGAGTCCAACTATGGCCCAATGAAAGGAGGCTATTCCAATCGGTCATCTGGGCCCTATGGAGGTGGTTATGGTTCGGGTG
GTGGTGGCTACGGAAGTGGTTCAGGGGGTGGTGGTTATGGTGGTGGTTCAGGAGCAGGATATGGGAGTGGTTATGGAGGT
TATGGTAGTGGGGAAAGTGGATATGGTGGGGCCTCTGGTGGTGGAGGATACAGCAGTGGGTATGGTGGCTATGGAGGAAA
GTAC

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 possible_ortholog 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 possible_ortholog 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 ortholog_one2one 1 retrogene
retro_cint_7,
Callithrix jacchus ENSCJAG00000007908 possible_ortholog 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Dasypus novemcinctus ENSDNOG00000012928 possible_ortholog 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 possible_ortholog 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 possible_ortholog 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 possible_ortholog 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 possible_ortholog 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 possible_ortholog 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 possible_ortholog 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 possible_ortholog 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Otolemur garnettii ENSOGAG00000015353 possible_ortholog 3 retrogenes
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189,
Ochotona princeps ENSOPRG00000011698 possible_ortholog 2 retrogenes
retro_opri_165, retro_opri_893,
Rattus norvegicus ENSRNOG00000011175 possible_ortholog 3 retrogenes
retro_rnor_1824, retro_rnor_2043, retro_rnor_2339,
Ictidomys tridecemlineatus ENSSTOG00000006202 possible_ortholog 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 possible_ortholog 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 possible_ortholog 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_csav_26 58.89 98.26
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Download FASTA sequences of all ENSCSAVG00000000472 retrocopies