Parental gene:

ACTC1, ENSPPYG00000006318

Aliases:None
Description:actin, alpha, cardiac muscle 1 [Source:HGNC Symbol;Acc:143]
Organism:Orangutan (Pongo abelii)
Coordinates:15:30962519..30967432(-)


>ENSPPYG00000006318
ATGTGTGACGACGAGGAGACCACCGCCCTGGTGTGCGACAACGGCTCTGGGCTGGTGAAGGCCGGCTTTGCGGGCGATGA
CGCGCCCCGCGCTGTCTTCCCGTCCATCGTGGGCCGCCCGCGGCACCAGGGAGTTATGGTGGGTATGGGTCAGAAGGACT
CCTACGTAGGTGATGAAGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGTATCATCACCAAC
TGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTGTGGCTCCCGAGGAGCACCCCACGCTGCT
CACAGAGGCCCCGCTGAACCCCAAGGCCAACCGGGAGAAGATGACTCAGATCATGTTTGAGACCTTCAATGTCCCTGCCA
TGTATGTGGCCATCCAGGCAGTGCTATCCCTGTATGCTTCTGGCCGTACCACAGGCATTGTTCTGGACTCTGGGGATGGT
GTAACTCACAATGTCCCCATCTATGAGGGCTACGCTTTGCCCCATGCCATCATGCGTCTGGATCTGGCTGGTAGGGACCT
CACTGACTACCTCATGAAGATCCTCACTGAGCGTGGCTACTCCTTTGTCACCACTGCTGAACGTGAAATTGTCCGTGACA
TTAAAGAGAAGCTGTGCTATGTCGCCCTGGATTTTGAGAATGAGATGGCCACAGCTGCCTCTTCCTCCTCCCTGGAGAAG
AGCTATGAACTGCCTGATGGCCAAGTCATCACTATTGGCAATGAGCGCTTCCGCTGTCCCGAGACGCTCTTCCAGCCCTC
CTTCATTGGTATGGAATCTGCTGGCATCCATGAAACAACTTACAATAGCATCATGAAGTGTGACATTGATATCCGCAAGG
ACCTGTATGCCAACAATGTCTTATCTGGAGGCACCACTATGTACCCTGGTATTGCTGATCGTATGCAGAAGGAAATCACT
GCTCTGGCTCCTAGCACCATGAAGATTAAGATTATTGCTCCCCCTGAGCGTAAATACTCTGTCTGGATTGGGGGCTCCAT
CCTGGCCTCTCTGTCCACCTTTCAGCAAATGTGGATTAGCAAGCAAGAGTACGATGAGGCAGGCCCATCCATTGTCCACC
GCAAATGCTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 17 .31 RPM
SRP007412_cerebellum 1 .46 RPM
SRP007412_heart 3683 .43 RPM
SRP007412_kidney 0 .56 RPM
SRP007412_liver 0 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Latimeria chalumnae ENSLACG00000011801 ortholog_one2one 1 retrogene
retro_lcha_19,
Oryctolagus cuniculus ENSOCUG00000004074 ortholog_one2one 1 retrogene
retro_ocun_38,
Pongo abelii ENSPPYG00000002459 other_paralog 1 retrogene
retro_pabe_3027,
Pongo abelii ENSPPYG00000002605 other_paralog 1 retrogene
retro_pabe_1930,
Pongo abelii ENSPPYG00000008735 other_paralog 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pongo abelii ENSPPYG00000017336 other_paralog 23 retrogenes
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1317 61.90 70.82
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Download FASTA sequences of all ENSPPYG00000006318 retrocopies