RetrogeneDB ID: | retro_pabe_2978 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:89210764..89211804(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 83.66 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | APRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR |
APRAVFPSIVG.PRHQGVMVGMGQKDSYVG.EAQSKRGILTLKYPI.HG.VTNWDDMEKIWHHT..N..R | |
Retrocopy | APRAVFPSIVGHPRHQGVMVGMGQKDSYVGKEAQSKRGILTLKYPIKHGNVTNWDDMEKIWHHT-HNKVR |
Parental | VAPEEHPVLLTEAPLNPKANREKMTQ-IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDS-GDGVTHTV |
V..EEHPVLLTEAPLNPK.N.EKMTQ.IMFET.NTPAMYVAIQAVLSLYASG.TTGI.M...G..VTHT. | |
Retrocopy | VTAEEHPVLLTEAPLNPKPNHEKMTQFIMFETSNTPAMYVAIQAVLSLYASGGTTGIMMHP<GNRVTHTL |
Parental | PIYEGYALP-HAILRLDLAGRDLTDYLMKILTERGYSFTTT-AEREIVRDIKEKLCYVALDFEQEMATAA |
.I.EGYALP.HAILRL.LAG.DLTDY..K.LT...YSFTTT..EREI..DIKEKLCYVAL.FEQEMA..A | |
Retrocopy | SI*EGYALP<HAILRLNLAGGDLTDYFKKTLTQHRYSFTTT<TEREIMCDIKEKLCYVALEFEQEMASVA |
Parental | SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG |
SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH.TTFNSIMKC..DI.KDLYANTVLSG | |
Retrocopy | SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHDTTFNSIMKC--DIHKDLYANTVLSG |
Parental | GTTMYPGIADRMQK-EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV |
GTTMYPGI.DRMQ..EIT.LAPSTMKIKIIAPP..K.SVWIG.SILAS.STFQQMWISKQE.D.S..SIV | |
Retrocopy | GTTMYPGITDRMQR<EITSLAPSTMKIKIIAPPQCKRSVWIGCSILASTSTFQQMWISKQE*D*SRASIV |
Parental | HRKCF |
H.KCF | |
Retrocopy | HSKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .03 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .13 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .03 RPM | 1654 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3631 |
Pan troglodytes | retro_ptro_2454 |
Gorilla gorilla | retro_ggor_2449 |