RetrogeneDB ID: | retro_pabe_2168 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b_random:18490..19622(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 89.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 7 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK-DSYVGDEAQSKRGILTLKY |
MDDD.A.LV.DNGSGMCKAGFAGDDA.RAVFPSIVGRPRHQG.M.GM.Q....YVG.E.QSKRGILTLKY | |
Retrocopy | MDDDAAVLVIDNGSGMCKAGFAGDDALRAVFPSIVGRPRHQGMMGGMRQN>EPYVGNETQSKRGILTLKY |
Parental | PIEHGIVTNWDDM-EKIWHHTFYNELRVAPEEHPVLLTE-APLNPKA-NREK-MTQIMFETFNT-PA-MY |
P.EHGI.TNWDDM.EKIWHHTFYNEL.VAPEEHP.LLTE.APLNPKA.NREK.MTQIMFETFNT.PA.MY | |
Retrocopy | PMEHGIITNWDDM>EKIWHHTFYNELHVAPEEHPILLTE>APLNPKA>NREK>MTQIMFETFNT>PA>MY |
Parental | VAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT |
VAIQAVLSLY.SGRTTGIVMDSGDGVTHTVPIYEG.ALPHA.L.LDLAGR.LTDYLMKILTERGY.FTTT | |
Retrocopy | VAIQAVLSLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLHLDLAGRELTDYLMKILTERGYRFTTT |
Parental | AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG |
AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY.LPDGQVITIGNER.RCPE.LFQP.FLGMESCG | |
Retrocopy | AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYKLPDGQVITIGNERLRCPEVLFQPCFLGMESCG |
Parental | IHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG |
IHETTFNSIMK.DVDIRKDLY.NTVLSGGTTMYPGIA.RMQKEI.ALAPSTMKIKI.APP.RKYSVW.GG | |
Retrocopy | IHETTFNSIMKSDVDIRKDLYTNTVLSGGTTMYPGIAHRMQKEIAALAPSTMKIKIVAPPKRKYSVWVGG |
Parental | SILASLSTFQQMWISKQEYDESGPSIVHRKCF |
SILASLSTFQQMWISKQEYDESGPS.VHRKCF | |
Retrocopy | SILASLSTFQQMWISKQEYDESGPSVVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .24 RPM | 578 .33 RPM |
SRP007412_heart | 0 .00 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .03 RPM | 1654 .82 RPM |