RetrogeneDB ID: | retro_pabe_1575 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 18:75255752..75256869(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 83.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE-AQSKRGILTLKY |
MDDD..AL..DNG.GMCKAGFAGD.A.RAVF.SI.G.PRHQGVMVGM.QKDSYVGD..AQSKR.ILTLKY | |
Retrocopy | MDDDTVALIIDNGCGMCKAGFAGDSALRAVFLSIMGHPRHQGVMVGMDQKDSYVGDK>AQSKRVILTLKY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
.IEHGIVTNW.DME.IW.HTFYNEL.VAPEEHP.LLTEA.LNPKAN.EK..QIMFETFNT.AMYVAIQA. | |
Retrocopy | RIEHGIVTNWEDMEEIWLHTFYNELHVAPEEHPLLLTEASLNPKANHEKVNQIMFETFNTLAMYVAIQAL |
Parental | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV |
LSL.ASG.TTGIVMDSGDGVTHTVPIYEGYALPH.IL.LDLAG.DLTD.LM.ILTE..YSFTTTA.REIV | |
Retrocopy | LSL*ASGHTTGIVMDSGDGVTHTVPIYEGYALPHTILHLDLAGPDLTDHLMQILTEHSYSFTTTAKREIV |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF |
R.IKEKLCYVALDFEQEMA..AS...LEKS.E.P.GQVI...NE.FRCPEALFQPSFLGMESCGIHETTF | |
Retrocopy | RNIKEKLCYVALDFEQEMAMVASNPLLEKS*EMPGGQVIC--NEQFRCPEALFQPSFLGMESCGIHETTF |
Parental | NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
NSI.KCD.DI.KD.Y.NTVLSGGTT.YPGIADRMQ.EIT.LAPSTMKIKIIAP.E.KYS.WIG.SILASL | |
Retrocopy | NSILKCDMDICKDQYVNTVLSGGTTLYPGIADRMQ-EITSLAPSTMKIKIIAPSEHKYSMWIGSSILASL |
Parental | STFQQMWISKQEYDESGPSIVHRKCF |
ST.QQMWISKQEYDES.PSIVHRKCF | |
Retrocopy | STSQQMWISKQEYDESSPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .03 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .03 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .03 RPM | 1654 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1894 |
Pan troglodytes | retro_ptro_1272 |
Gorilla gorilla | retro_ggor_1387 |