Parental gene:

ACTG1, ENSPPYG00000008735

Aliases:None
Description:actin, gamma 1 [Source:HGNC Symbol;Acc:144]
Organism:Orangutan (Pongo abelii)
Coordinates:17:71610847..71612507(-)


>ENSPPYG00000008735
ATGGAAGAAGAGATCGCCGCGCTCGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGACGCTCC
CCGAGCCGTGTTTCCTTCCATCGTCGGGCGCCCCAGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACG
TGGGCGACGAGGCCCAGAGCAAGCGTGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGCATCGTCACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACTTTCTACAACGAGCTGCGCGTGGCTCCGGAGGAGCATCCAGTGCTGCTGACCGA
GGCCCCCCTGAACCCCAAGGCCAACAGAGAGAAGATGACTCAGATTATGTTTGAGACCTTCAACACCCCGGCCATGTACG
TGGCCATCCAGGCCGTGCTGTCCCTCTACGCTTCTGGGCGCACCACTGGCATTGTCATGGACTCTGGAGACGGGGTCACC
CACACGGTGCCCATCTACGAGGGCTACGCCCTCCCCCACGCTATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGA
CTACCTCATGAAGATCCTCACCGAGCGAGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGCGACATCAAGG
AGAAGCTGTGCTACGTCGCCCTGGATTTCGAGCAGGAGATGGCCACCGCCGCATCCTCCTCTTCGCTGGAGAAGAGCTAC
GAGCTGCCTGATGGCCAGGTCATCACCATTGGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCTTTCTT
GGGCATGGAATCTTGCGGCATCCACGAGACCACCTTCAACTCCATTATGAAGTGTGACGTGGATATCCGCAAAGACCTGT
ACGCCAACACGGTGCTGTCCGGCGGCACCACCATGTACCCAGGCATTGCCGACAGGATGCAGAAGGAGATCACTGCCCTG
GCGCCCAGTACCATGAAGATCAAGATCATTGCACCCCCAGAGCGCAAGTACTCAGTGTGGATCGGCGGCTCCATCCTGGC
CTCACTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGACGAGTCGGGCCCCTCCATCGTCCATCGCAAAT
GCTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 426 .62 RPM
SRP007412_cerebellum 117 .22 RPM
SRP007412_heart 145 .94 RPM
SRP007412_kidney 354 .54 RPM
SRP007412_liver 440 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 ortholog_one2one 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG00000016015 ortholog_one2one 1 retrogene
retro_amel_929,
Callithrix jacchus ENSCJAG00000002885 ortholog_one2one 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Cavia porcellus ENSCPOG00000012101 ortholog_one2one 1 retrogene
retro_cpor_361,
Equus caballus ENSECAG00000018600 ortholog_one2one 1 retrogene
retro_ecab_98,
Felis catus ENSFCAG00000026434 ortholog_one2one 2 retrogenes
retro_fcat_257, retro_fcat_377,
Homo sapiens ENSG00000184009 ortholog_one2one 10 retrogenes
retro_hsap_1548, retro_hsap_1607, retro_hsap_2405, retro_hsap_2591, retro_hsap_2605, retro_hsap_3466, retro_hsap_3631, retro_hsap_409, retro_hsap_4818, retro_hsap_4935,
Gallus gallus ENSGALG00000028749 ortholog_one2one 1 retrogene
retro_ggal_6,
Gorilla gorilla ENSGGOG00000014043 ortholog_one2one 6 retrogenes
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Monodelphis domestica ENSMODG00000002647 ortholog_one2one 3 retrogenes
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furo ENSMPUG00000011610 ortholog_one2one 1 retrogene
retro_mputfur_279,
Mus musculus ENSMUSG00000062825 ortholog_one2one 7 retrogenes
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Nomascus leucogenys ENSNLEG00000015506 possible_ortholog 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000002459 within_species_paralog 1 retrogene
retro_pabe_3027,
Pongo abelii ENSPPYG00000002605 other_paralog 1 retrogene
retro_pabe_1930,
Pongo abelii ENSPPYG00000006318 other_paralog 1 retrogene
retro_pabe_1317,
Pongo abelii ENSPPYG00000017336 within_species_paralog 23 retrogenes
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
Pelodiscus sinensis ENSPSIG00000002102 ortholog_one2one 2 retrogenes
retro_psin_25, retro_psin_4,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Sus scrofa ENSSSCG00000028355 ortholog_one2one 1 retrogene
retro_sscr_389,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_600 77.03 58.67
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2. retro_pabe_1091 89.27 76.80
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3. retro_pabe_1391 72.40 50.93
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4. retro_pabe_1727 79.30 67.47
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5. retro_pabe_2187 85.50 68.80
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6. retro_pabe_2308 79.14 79.73
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7. retro_pabe_2621 77.54 98.93
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8. retro_pabe_2945 78.04 78.13
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9. retro_pabe_3381 85.91 76.80
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10. retro_pabe_3475 78.14 80.00
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11. retro_pabe_3760 84.42 52.00
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Download FASTA sequences of all ENSPPYG00000008735 retrocopies