RetrogeneDB ID: | retro_pabe_1292 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:40450473..40451594(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 78.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDA-PRAVFPS-IVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK |
MDDDI..LVVDNGSG.CKA.FAGD.A.P....PS.IVGRPRHQG..VGM.QKDSYVGDEAQSKRGILTLK | |
Retrocopy | MDDDITMLVVDNGSGICKASFAGDNAHPGPSSPS<IVGRPRHQGMTVGMSQKDSYVGDEAQSKRGILTLK |
Parental | YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA |
Y.IE..IVT.WDDM.KIWHHTFYNEL.VA..EHP.LLT..PL.PKAN..K.TQIMFE.F..PAMYVAIQA | |
Retrocopy | YRIEQDIVTTWDDMGKIWHHTFYNELCVAAKEHPMLLTKVPLSPKANHKKITQIMFEIFDRPAMYVAIQA |
Parental | VL-SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE |
VL..LY.SGRTTGIVMD.GDGVTH.VPI.E.YALPH.IL..DLAG.DLTDYLMKILT...Y.FT.TA..E | |
Retrocopy | VL<ALYISGRTTGIVMDYGDGVTHNVPICEEYALPHTILHVDLAGQDLTDYLMKILT*CSYIFTATAKQE |
Parental | IVRDIKEKLCYVALDFEQEMATAASSSSLE-KSYELPDGQVITIG-NERFRCPEALFQPSFLGMESCGIH |
IV.DIKEKLCYV.LD.EQE.A..ASSSSLE..SY.LPD.Q.ITI.....F.CPEALFQPSFLGMESCGIH | |
Retrocopy | IVHDIKEKLCYVTLDLEQEIAMVASSSSLE<DSYKLPDSQIITIS<QKQFCCPEALFQPSFLGMESCGIH |
Parental | ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI |
ETTFNSIMKCDVDI.KDLYANT.LSGGTT.YPGIA.RMQK.IT.LAPSTMKIKIIAP..RKYS.WIG.SI | |
Retrocopy | ETTFNSIMKCDVDILKDLYANTALSGGTTTYPGIANRMQK-ITTLAPSTMKIKIIAPTKRKYSMWIGSSI |
Parental | LASLSTFQQMWISKQEYDESGPSIVHRKCF |
LA.LST.QQMWISKQEYDESG.SI.HR.CF | |
Retrocopy | LARLSTVQQMWISKQEYDESGTSIIHRRCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .24 RPM | 578 .33 RPM |
SRP007412_heart | 0 .00 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .00 RPM | 1654 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1563 |
Pan troglodytes | retro_ptro_1051 |
Gorilla gorilla | retro_ggor_1188 |