Parental gene:

SRSF6, ENSPPYG00000011019

Aliases:None
Description:splicing factor, arginine/serine-rich 6 [Source:RefSeq peptide;Acc:NP_001182497]
Organism:Orangutan (Pongo abelii)
Coordinates:20:40819668..40827095(+)


>ENSPPYG00000011019
ATGCCGCGCGTCTACATAGGACGCCTGAGCTACAATGTCCGGGAGAAAGACATCCAGCGATTTTTCAGTGGCTACGGCCG
CCTCCTCGAAGTAGACCTCAAAAATGGGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCGTTTACG
AGCTGAACGGCAAGGAGCTCTGCGGCGAGCGCGTGATCGTAGAGCACGCCCGGGGTCCGCGTCGCGATCGCGACGGCTAC
AGCTACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTCGGAGAACATCTGGCAGAGACAAATACGGACCACCTGTTCG
TACAGAATACAGGCTTATTGTAGAAAATCTTTCTAGTCGGTGCAGTTGGCAAGATTTAAAGGATTTTATGCGACAAGCAG
GTGAAGTAACCTATGCGGATGCCCACAAGGAACGAACAAATGAGGGTGTAATTGAGTTTCGCTCCTACTCTGACATGAAG
CGTGCTTTGGACAAACTGGATGGCACAGAAATAAATGGCAGAAATATTAGGCTTATTGAAGATAAGCCACGCACAAGCCA
TAGGCGATCTTACTCTGGAAGCAGATCCAGGTCTCGATCTAGAAGACGGTCACGAAGTAGGAGTCGCAGGAGCAGCCGCA
GTAGATCTCGAAGTATCTCAAAAAGTCGCTCCCGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCGATCAAAAGGC
AGGAAATCTAGATCAAAGAGCAAATCTAAGCCCAAGTCTGATCGGGGCTCCCATTCACATTCTCGAAGCAGATCTAAGGA
TGAGTATGAGAAATCTCGAAGCAGGTCTCGGTCCCGATCCCCCAAAGAAAATGGAAAGGGTGATATAAAGTCAAAATCCA
GATCAAGGAGCCAGTCCCGTTCCAATTCGCCGCTACCTGTTCCACCCTCAAAGGCCCGTTCTGTGTCCCCTCCACCAAAA
AGAGCTACTTCAAGATCCCGTTCTAGATCTCGCTCAAAGTCAAGATCAAGGTCCAGGTCGAGTTCCAGAGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 49 .71 RPM
SRP007412_cerebellum 118 .44 RPM
SRP007412_heart 44 .40 RPM
SRP007412_kidney 121 .25 RPM
SRP007412_liver 119 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002061 ortholog_one2one 1 retrogene
retro_acar_191,
Echinops telfairi ENSETEG00000006221 ortholog_one2one 1 retrogene
retro_etel_1261,
Homo sapiens ENSG00000124193 ortholog_one2one 1 retrogene
retro_hsap_1809,
Gorilla gorilla ENSGGOG00000009808 ortholog_one2one 1 retrogene
retro_ggor_2176,
Monodelphis domestica ENSMODG00000003107 ortholog_one2one 1 retrogene
retro_mdom_697,
Nomascus leucogenys ENSNLEG00000006524 ortholog_one2one 1 retrogene
retro_nleu_1294,
Oryctolagus cuniculus ENSOCUG00000009785 possible_ortholog 1 retrogene
retro_ocun_312,
Pongo abelii ENSPPYG00000005031 within_species_paralog 1 retrogene
retro_pabe_119,
Pan troglodytes ENSPTRG00000013506 ortholog_one2one 1 retrogene
retro_ptro_3057,
Rattus norvegicus ENSRNOG00000006380 ortholog_one2many 1 retrogene
retro_rnor_1752,
Tursiops truncatus ENSTTRG00000015410 ortholog_one2one 2 retrogenes
retro_ttru_1786, retro_ttru_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1483 89.28 100.00
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Download FASTA sequences of all ENSPPYG00000011019 retrocopies