RetrogeneDB ID:

retro_ttru_1786

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_91510:58650..59277(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SRSF6
Ensembl ID:ENSTTRG00000015410
Aliases:None
Description:serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788]


Retrocopy-Parental alignment summary:






>retro_ttru_1786
GGAGGCGGATACGGCAGTCGGAGAACCTCTGGCAGAAGTGAATCTGGACCACCTGTACGCGCAGAATTCAGGCTTATTGT
AGAACACTTTTCTAGTCTTTGCAGTTGGCGAGATTTAAAGGATTTCATGAGACGAGCAGGTGAAGTAACCTATGCGGATG
ATCACGAAGAACGCACAAATGAAGGCGTCAGTGAGTTTCGCTCCTACTCGGACATGAAGCGTGCTTTGGATAAGCTGGAC
GGTACGGAAATCAATGGGAGAAATATTAGACTAAAGAAGATAAACCACGAACACCACAGGCGGTCTTATTCTGGAAGCAG
ATCAAGGTCACGGACTAGAAGAAGGTCACGAAGTAGAAGTCGTAGGAGCAGCCGCAGTAGATCTCGAAGTATCTCAAAAA
GTTGCTCCCGGTCCAGGTCTCGGAGCAAAGGTCGATCACGTTCTCGTTCAAAAGGCAGGAAATCTAGATCAAAAAGCAAA
TCTAAACCTAAGTCTGATCGAGGCTCCCGTTTGCGCTTTCGGAGCAGATCGAAGGATGAATATGAGAAGTTTCGAAGCAG
GTCTCGTTCTCCATCTCTTTCCCCCAAAGAAAATGGGGAAGGTGATATAAAGTCAAAACCTAGATCA

ORF - retro_ttru_1786 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.52 %
Parental protein coverage: 81.08 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYS
GGGY.SRRTSGR...GPPVR.EFRLIVE..SS.CSW.DLKDFMR.AGEVTYAD.H.ERTNEGV.EFRSYS
RetrocopyGGGYGSRRTSGRSESGPPVRAEFRLIVEHFSSLCSWRDLKDFMRRAGEVTYADDHEERTNEGVSEFRSYS
ParentalDMKRALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSVSKSRSRSR
DMKRALDKLDGTEINGRNIRL........HRRSYSGSR.............RRSSRSRSRS.SKS.SRSR
RetrocopyDMKRALDKLDGTEINGRNIRLKKIN-HEHHRRSYSGSRXXXXXXXXXXXXXRRSSRSRSRSISKSCSRSR
ParentalSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRSRSRSRSRSPKENGKGDIKSKSRS
SRSKGRSRSRSKGRKSRSKSKSKPKSDRGSR.R.RSRSKDEYEK.RSRSRS.S.SPKENG.GDIKSK.RS
RetrocopySRSKGRSRSRSKGRKSRSKSKSKPKSDRGSRLRFRSRSKDEYEKFRSRSRSPSLSPKENGEGDIKSKPRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1786 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1786 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000020611 retrocopy
Echinops telfairi ENSETEG000000062211 retrocopy
Homo sapiens ENSG000001241931 retrocopy
Gorilla gorilla ENSGGOG000000098081 retrocopy
Monodelphis domestica ENSMODG000000031071 retrocopy
Nomascus leucogenys ENSNLEG000000065241 retrocopy
Oryctolagus cuniculus ENSOCUG000000097851 retrocopy
Pongo abelii ENSPPYG000000110191 retrocopy
Pan troglodytes ENSPTRG000000135061 retrocopy
Rattus norvegicus ENSRNOG000000063801 retrocopy
Tursiops truncatus ENSTTRG0000001344711 retrocopies
Tursiops truncatus ENSTTRG00000015410 2 retrocopies
retro_ttru_1786 , retro_ttru_1787,



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