RetrogeneDB ID: | retro_ocun_312 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:143443968..143444571(+) | ||
Located in intron of: | ENSOCUG00000010457 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF6 | ||
Ensembl ID: | ENSOCUG00000009785 | ||
Aliases: | None | ||
Description: | Serine/arginine-rich splicing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:O18776] |
Percent Identity: | 57. % |
Parental protein coverage: | 68.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KGGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFR |
...GGG.SSRR.SG.D..G.PV...YRLIVEN..SRCSWQD.KDFM.QAGEVT..DAH.E.TNE.VIE.. | |
Retrocopy | RSAGGGDSSRRASGGDRCGLPVYVGYRLIVENPFSRCSWQDSKDFMWQAGEVTEVDAHRECTNEVVIELC |
Parental | SYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSR-SRSRSISKSR |
SY.D.K.A.DK.D.TEINGRN..L.ED.P...H.RSY.G....SRSR...R....RS.R........... | |
Retrocopy | SYWDTKCAVDKMDSTEINGRNVSLVEDEP*ENHGRSYQG----SRSRSWCRRPAGRSCR>ASAVDLPGNM |
Parental | SRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSK-DEYEKSRSRSRSRSRSPKENGKG |
..S.S.S...S...S.GRK.RS.SK.KPKSDRG.RS.SRS.SK.D..E...SR..S...SPKENGKG | |
Retrocopy | LKSHSQSRFQSKDPSQGRKCRSESKPKPKSDRGFRSHSRSGSK<DASEQAQSRPQSLALSPKENGKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 89 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .57 RPM |
SRP017611_liver | 0 .00 RPM | 52 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002061 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000009289 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006221 | 1 retrocopy | |
Homo sapiens | ENSG00000124193 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009808 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003107 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006684 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009785 | 1 retrocopy |
retro_ocun_312 ,
|
Pongo abelii | ENSPPYG00000011019 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013506 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006380 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013448 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015410 | 2 retrocopies |