Parental gene:

SRSF6, ENSPTRG00000013506

Aliases:None
Description:serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:40423910..40427597(+)


>ENSPTRG00000013506
ATGCCGCTAGAAGAGATAGGACGCCTGAGCTACAACGTCCGGGAGAAGGACATCCAGCGCTTTTTCAGTGGCAGCCGCCT
CCTCGAAGTAGGCCTCAAAAAAGGGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCGTTTACGAGC
TGAACGGCAAGGAGCTCTGCGGCGAGCGCGTGATCGTAGAGCACGCCCGGGGCCCGCGTCGCGATCGCGACGGCTACAGC
TACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTCGGAGAACATCTGGCAGAGACAAATACGGACCACCTGTTCGTAC
AGAATACAGGCTTATTGTAGAAAATCTTTCTAGTCGGTGCAGTTGGCAAGATTTAAAGGATTTTATGCGACAAGCAGGTG
AAGTAACCTATGCGGATGCCCACAAGGAACGAACAAATGAGGGTGTAATTGAGTTTCGCTCCTACTCTGACATGAAGCGT
GCTTTGGACAAACTGGATGGCACAGAAATAAATGGCAGAAATATTAGGCTTATTGAAGATAAGCCACGCACAAGCCATAG
GCGATCTTACTCTGGAAGCAGATCCAGGTCTCGATCTAGAAGACGGTCACGAAGTAGGAGTCGCAGGAGCAGCCGCAGTA
GATCTCGAAGTATCTCAAAAAGTCGCTCCCGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCGATCAAAAGGCAGG
AAATCTAGATCAAAGAGCAAATCTAAGCCCAAGTCTGATCGGGGCTCCCATTCACATTCTCGAAGCAGATCTAAGGATGA
GTATGAGAAATCTCGAAGCAGGTCTCGGTCCCGATCCCCCAAAGAAAATGGAAAGGGTGATATAAAGTCAAAATCCAGAT
CAAGGAGCCAGTCCCGTTCCAATTCGCCGCTACCTGTTCCACCCTCAAAGGCCCATTCTGTGTCCCCTCCACCAAAAAGA
GCTACTTCAAGATCCCGTTCTAGATCTCGCTCAAAGTCAAGATCAAGGTCCAGGTCGAGTTCCAGAGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 28 .90 RPM
SRP007412_cerebellum 43 .34 RPM
SRP007412_heart 20 .40 RPM
SRP007412_kidney 56 .78 RPM
SRP007412_liver 39 .18 RPM
SRP007412_testis 53 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002061 ortholog_one2one 1 retrogene
retro_acar_191,
Echinops telfairi ENSETEG00000006221 ortholog_one2one 1 retrogene
retro_etel_1261,
Homo sapiens ENSG00000124193 ortholog_one2one 1 retrogene
retro_hsap_1809,
Gorilla gorilla ENSGGOG00000009808 ortholog_one2one 1 retrogene
retro_ggor_2176,
Monodelphis domestica ENSMODG00000003107 ortholog_one2one 1 retrogene
retro_mdom_697,
Nomascus leucogenys ENSNLEG00000006524 ortholog_one2one 1 retrogene
retro_nleu_1294,
Oryctolagus cuniculus ENSOCUG00000009785 possible_ortholog 1 retrogene
retro_ocun_312,
Pongo abelii ENSPPYG00000011019 ortholog_one2one 1 retrogene
retro_pabe_1483,
Pan troglodytes ENSPTRG00000018106 other_paralog 4 retrogenes
retro_ptro_1566, retro_ptro_1628, retro_ptro_2776, retro_ptro_533,
Rattus norvegicus ENSRNOG00000006380 ortholog_one2many 1 retrogene
retro_rnor_1752,
Tursiops truncatus ENSTTRG00000015410 ortholog_one2one 2 retrogenes
retro_ttru_1786, retro_ttru_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3057 91.10 97.67
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Download FASTA sequences of all ENSPTRG00000013506 retrocopies