Parental gene:

Srsf6, ENSRNOG00000006380

Aliases:Srsf6, Sfrs6
Description:splicing factor, arginine/serine-rich 6 [Source:RefSeq peptide;Acc:NP_001014207]
Organism:Rat (Rattus norvegicus)
Coordinates:3:165502384..165507708(+)


>ENSRNOG00000006380
ATGCCGCGCGTCTACATAGGACGCCTGAGCTACAACGTCCGCGAGAAGGACATCCAGCGCTTTTTCAGCGGCTACGGCCG
CCTCCTCGAAATCGACCTCAAAAATGGGTACGGTTTCGTGGAGTTCGAGGACTCCCGTGATGCGGACGACGCCGTTTACG
AGCTGAACAGCAAGGAGCTGTGCGGCGAGCGCGTGATCGTAGAGCACGCCCGGGGCCCGCGCCGGGACCGCGATGGCTAC
AGCTACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTCGGAGAACTTCTGGCAGAGACAAATATGGACCACCTGTTCG
TACAGAATACAGGCTTATTGTAGAAAATCTATCTAGTCGTTGCAGTTGGCAAGACTTAAAGGATTTCATGCGGCAAGCAG
GAGAGGTGACTTATGCAGATGCTCACAAAGAACGAACAAATGAGGGTGTAATTGAATTTAGATCCTACTCTGACATGAAG
CGTGCTTTGGATAAACTGGATGGCACAGAAATAAATGGCAGGAATATACGGCTTATTGAAGATAAGCCACGAACAAGCCA
TAGGCGCTCTTACTCTGGAAGTAGATCCAGATCACGGTCTAGAAGAAGATCTCGGAGTAGGAGTCGCAGAAGCAGCCGCA
GTAGATCTCGAAGTATCTCAAAAAGTCGCTCGCGATCTAGGTCTCGGAGCAAAGGTCGATCCCGATCCCGCTCAAAGGGC
AGGAAATCCAGATCAAAGAGCAAATCTAAGCCCAAGTCTGATCGGGGTTCCCATTCACATTCAAGAAGCAGATCTAAGGA
TAAGTATGGGAAGTCACGAAGTAGGTCACGTTCTCGGTCCCCCAAAGAAAATGGAAAAGGAGATATAAAGTCAAAATCCA
GATCCCGGAGCCAGTCTCGATCCCATTCGCCTCTGCCTGCTCCACCCTCAAAGGCTCGGTCCATGTCCCCTCCGCCAAAA
AGAGCTTCAAGGTCCCGTTCTAGATCTCGTTCCAGGTCCAGATCAAGTTCCAGAGATTAG

Library Parental gene expression (RPM)
SRP017611_liver 59 .51 RPM
SRP017611_kidney 112 .56 RPM
SRP017611_brain 84 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002061 ortholog_one2many 1 retrogene
retro_acar_191,
Canis familiaris ENSCAFG00000009289 ortholog_one2many 1 retrogene
retro_cfam_392,
Echinops telfairi ENSETEG00000006221 ortholog_one2many 1 retrogene
retro_etel_1261,
Homo sapiens ENSG00000124193 ortholog_one2many 1 retrogene
retro_hsap_1809,
Gorilla gorilla ENSGGOG00000009808 ortholog_many2many 1 retrogene
retro_ggor_2176,
Monodelphis domestica ENSMODG00000003107 ortholog_one2many 1 retrogene
retro_mdom_697,
Nomascus leucogenys ENSNLEG00000006524 ortholog_one2many 1 retrogene
retro_nleu_1294,
Oryctolagus cuniculus ENSOCUG00000009785 ortholog_many2many 1 retrogene
retro_ocun_312,
Pongo abelii ENSPPYG00000011019 ortholog_one2many 1 retrogene
retro_pabe_1483,
Pan troglodytes ENSPTRG00000013506 ortholog_one2many 1 retrogene
retro_ptro_3057,
Rattus norvegicus ENSRNOG00000000520 other_paralog 11 retrogenes
retro_rnor_1010, retro_rnor_1283, retro_rnor_1321, retro_rnor_1339, retro_rnor_1647, retro_rnor_1697, retro_rnor_1889, retro_rnor_2424, retro_rnor_634, retro_rnor_728, retro_rnor_790,
Rattus norvegicus ENSRNOG00000005513 within_species_paralog 1 retrogene
retro_rnor_2900,
Rattus norvegicus ENSRNOG00000027360 other_paralog 11 retrogenes
retro_rnor_1535, retro_rnor_1977, retro_rnor_1984, retro_rnor_2419, retro_rnor_2420, retro_rnor_2421, retro_rnor_2495, retro_rnor_2501, retro_rnor_2502, retro_rnor_2503, retro_rnor_478,
Tupaia belangeri ENSTBEG00000013448 ortholog_one2many 1 retrogene
retro_tbel_383,
Tursiops truncatus ENSTTRG00000015410 ortholog_one2many 2 retrogenes
retro_ttru_1786, retro_ttru_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1752 65.87 72.57
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Download FASTA sequences of all ENSRNOG00000006380 retrocopies