RetrogeneDB ID: | retro_mdom_697 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:151398476..151399011(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF6 | ||
Ensembl ID: | ENSMODG00000003107 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788] |
Percent Identity: | 55.19 % |
Parental protein coverage: | 52.49 % |
Number of stop codons detected: | 14 |
Number of frameshifts detected | 1 |
Parental | SDMKRALDKLDGTEINGR-NIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSASKSRSR |
S.MK.A..KLDGTEIN....I.L...K.......S.S.SR..S.SR..S.SR..RSS.S.S.SA.K..SR | |
Retrocopy | SYMKHAINKLDGTEINDKYKINLSSAKVKP*EICSLSRSR--SQSRQMS*SRI*RSS*SWS*SA*KGCSR |
Parental | SKSRSRSKDHSRSRSKGRKSRSKSK-SKAKSDRGSRSRSRSKAKSEKSRSRSRSPSPKENGKGETKSKSR |
SK..S..KDHS.S.S.GRKSRSKSK......D.G..S.SRS.AKSEK...RSR..SPKENGKGETKSK.R | |
Retrocopy | SK--SCGKDHS*S*SEGRKSRSKSK*I*VNCD*GFGSHSRSEAKSEK*HHRSRFTSPKENGKGETKSKLR |
Parental | SRSQSHSNSPQPPPPSKARS-ESPPVKRATSVS-HSRSRSRSR |
S.S..H..S.Q.PPP.K....ES..V....S.S..S.SRS.SR | |
Retrocopy | SGS*CHFTSSQTPPP*KTHC>ESLSVRKCISISILSQSRSSSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 170 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 190 .00 RPM |
SRP007412_heart | 0 .00 RPM | 147 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 294 .97 RPM |
SRP007412_liver | 0 .00 RPM | 252 .25 RPM |
SRP007412_testis | 0 .00 RPM | 183 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002061 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000009289 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006221 | 1 retrocopy | |
Homo sapiens | ENSG00000124193 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009808 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003107 | 1 retrocopy |
retro_mdom_697 ,
|
Monodelphis domestica | ENSMODG00000008669 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011362 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009785 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011019 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013506 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006380 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013448 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015410 | 2 retrocopies |