Parental gene:

ENSPPYG00000013993

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:3:107269789..107282873(-)


>ENSPPYG00000013993
ATGTCCGGAGCCCTTGATGTCCTGCAAATGAAGGAGGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTGG
CACCAATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTATATCATAAATCTGAAGAGGA
CGTGGGAGAAGCTTCTGTTGGCAGCTCGTGCTATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGG
AATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTCACTCCTGGAAC
CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCTTGTGGTTACTGACCCCAGGGCTGACCACCAGCCTC
TCACGGAGGCATCTTACGTTAACCTGCCTACCATTGCGCTGTGTAACACAGATTCTCCTTTGCGCTATGTGGACATTGCC
ATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTTCGCATGCGTGG
CACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAG
AGCAGGCTGCTGCTGAAAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCAGCTCCTGAGTTCACTGCT
ACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAGTTCCCTACTGAAGACTG
GAGCGCTCAGCCTGCCACAGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGATATTTTTGGAAATGAGTT
GGGGACAAGGAAAAAGCTATAATTGCACAGACATCTACCCCACTTCTGCCTCCTGCTGCACTCTCACTGAGAGACAATGG
TCCAAGAAGCACTCTTCCCCTCTCCATGGCTGGCTAGCTAGGTTCACACTGGTGCAAAGAGCACTCGACATTGCCAGAAG
TGTGCATCATCATGTCCCAATGGTAAGGCCCTCTCACCACCTCTCCTCAGCGACTCAGCTCTGCATTTTCTTCCATCCAA
TACTCTTATCTCAACCCAAGGGGTGTCTT

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 134 .85 RPM
SRP007412_cerebellum 109 .32 RPM
SRP007412_heart 138 .54 RPM
SRP007412_kidney 183 .67 RPM
SRP007412_liver 207 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 possible_ortholog 13 retrogenes
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 possible_ortholog 27 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000013062 possible_ortholog 5 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000002739 possible_ortholog 22 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 possible_ortholog 32 retrogenes
Monodelphis domestica ENSMODG00000010967 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000004505 possible_ortholog 16 retrogenes
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 possible_ortholog 2 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_116 95.92 76.76
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2. retro_pabe_818 70.53 53.52
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3. retro_pabe_1085 86.80 63.97
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4. retro_pabe_1142 96.19 54.57
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Download FASTA sequences of all ENSPPYG00000013993 retrocopies