Parental gene: | ISCA1, ENSPTRG00000021075 |
| Aliases: | None |
| Description: | Pan troglodytes iron-sulfur cluster assembly 1 homolog (S. cerevisiae) (ISCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001242612] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 9:85087337..85105761(-) |
>ENSPTRG00000021075
ATGGTGGCGGCGGGGGGCGGGGCTAGGACTGAGGGCGCCGTGCGCCGAAGCTTGTGGCGTCAATGCGCCCGCCGTGTCCA
TGGAGAGAAGCTGAGGCGGCAGACCTTCGGCCCGAGGCACCGGGGCGCCGGGACGGCGAAGATGTCGGCTTCCTTAGTCC
GGGCAACTGTCCGGGCTGTGAGCAAGAGGAAGCTGCAGCCCACCCGGGCAGCCCTCACCCTGACACCTTCAGCAGTAAAC
AAGATAAAACAACTTCTTAAAGATAAGCCTGAGCATGTAGGTGTAAAAGTTGGTGTCCGAACCAGGGGCTGTAATGGCCT
TTCTTATACTCTAGAATATACAAAGACAAAAGGAGATTCTGATGAAGAAGTTATTCAAGATGGAGTCAGAGTATTCATCG
AAAAGAAAGCACAGCTAACACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGTGAGTTTGTGTTCAAT
AACCCAAACATCAAAGGGACTTGTGGCTGTGGAGAAAGCTTTAATATTTGA
ATGGTGGCGGCGGGGGGCGGGGCTAGGACTGAGGGCGCCGTGCGCCGAAGCTTGTGGCGTCAATGCGCCCGCCGTGTCCA
TGGAGAGAAGCTGAGGCGGCAGACCTTCGGCCCGAGGCACCGGGGCGCCGGGACGGCGAAGATGTCGGCTTCCTTAGTCC
GGGCAACTGTCCGGGCTGTGAGCAAGAGGAAGCTGCAGCCCACCCGGGCAGCCCTCACCCTGACACCTTCAGCAGTAAAC
AAGATAAAACAACTTCTTAAAGATAAGCCTGAGCATGTAGGTGTAAAAGTTGGTGTCCGAACCAGGGGCTGTAATGGCCT
TTCTTATACTCTAGAATATACAAAGACAAAAGGAGATTCTGATGAAGAAGTTATTCAAGATGGAGTCAGAGTATTCATCG
AAAAGAAAGCACAGCTAACACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGTGAGTTTGTGTTCAAT
AACCCAAACATCAAAGGGACTTGTGGCTGTGGAGAAAGCTTTAATATTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 38 .84 RPM |
| SRP007412_cerebellum | 15 .67 RPM |
| SRP007412_heart | 11 .86 RPM |
| SRP007412_kidney | 15 .38 RPM |
| SRP007412_liver | 5 .04 RPM |
| SRP007412_testis | 8 .54 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000046526 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001940 | ortholog_one2one | 6 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000010652 | possible_ortholog | 5 retrogenes | |
| Echinops telfairi | ENSETEG00000016537 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000135070 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007518 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000003399 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000003559 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000044792 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019339 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018343 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012826 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_256 | 91.96 | 63.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1047 | 71.94 | 77.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1185 | 81.29 | 85.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1316 | 85.71 | 86.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1689 | 94.19 | 88.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2149 | 92.45 | 90.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2842 | 100.00 | 59.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000021075 retrocopies