Parental gene: | SUMO2, ENSPTRG00000042199 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 17:74089410..74105430(-) |
>ENSPTRG00000042199
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGATTGT
CAATGAGGCAGATCAGATTCCGATTCGACGGGCAACCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTCCAACAGCAGACGGGAGGTGTCTACTGA
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGATTGT
CAATGAGGCAGATCAGATTCCGATTCGACGGGCAACCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTCCAACAGCAGACGGGAGGTGTCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 61 .99 RPM |
| SRP007412_cerebellum | 44 .74 RPM |
| SRP007412_heart | 24 .83 RPM |
| SRP007412_kidney | 32 .40 RPM |
| SRP007412_liver | 24 .75 RPM |
| SRP007412_testis | 73 .98 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009189 | ortholog_one2one | 13 retrogenes | |
| Cavia porcellus | ENSCPOG00000004581 | ortholog_one2one | 9 retrogenes | |
| Homo sapiens | ENSG00000188612 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000025811 | possible_ortholog | 10 retrogenes | |
| Monodelphis domestica | ENSMODG00000007222 | possible_ortholog | 11 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000028195 | ortholog_one2many | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000029777 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000012817 | within_species_paralog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000017212 | ortholog_one2one | 15 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_65 | 96.81 | 98.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_135 | 77.97 | 62.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_143 | 69.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1004 | 76.14 | 92.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1183 | 81.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1263 | 82.42 | 95.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1775 | 87.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2051 | 80.33 | 64.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2147 | 85.56 | 94.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2212 | 94.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_2247 | 69.79 | 98.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ptro_2252 | 65.17 | 92.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ptro_2400 | 85.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_ptro_2463 | 84.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_ptro_2528 | 91.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_ptro_2605 | 56.70 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_ptro_2666 | 77.17 | 96.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_ptro_2759 | 88.42 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_ptro_3260 | 97.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000042199 retrocopies