RetrogeneDB ID: | retro_amel_1434 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193367.1:33640..33916(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO2 | ||
Ensembl ID: | ENSAMEG00000009189 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 2 [Source:HGNC Symbol;Acc:11125] |
Percent Identity: | 80.43 % |
Parental protein coverage: | 96.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP |
E.PKEGVKTENNDH.NL.V...DGSVV.FKIKRH.PLSK.MKAYCERQGLSMR..RF.FDGQPI.ETDTP | |
Retrocopy | EEPKEGVKTENNDHVNLEVEEKDGSVVRFKIKRHMPLSKQMKAYCERQGLSMREVRF*FDGQPIHETDTP |
Parental | AQLEMEDEDTIDVFQQQTGGVY |
AQLE.E.ED..D.FQQQTGGVY | |
Retrocopy | AQLEVEEEDVVDEFQQQTGGVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002071 | 3 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000009189 | 13 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000013225 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000004581 | 9 retrocopies | |
Homo sapiens | ENSG00000188612 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000025811 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000007222 | 11 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000028195 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000029777 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000042199 | 19 retrocopies |
retro_ptro_1004, retro_ptro_1183, retro_ptro_1263, retro_ptro_135, retro_ptro_143, retro_ptro_1775, retro_ptro_2051, retro_ptro_2147, retro_ptro_2212, retro_ptro_2247, retro_ptro_2252, retro_ptro_2400, retro_ptro_2463, retro_ptro_2528, retro_ptro_2605, retro_ptro_2666, retro_ptro_2759, retro_ptro_3260, retro_ptro_65,
|
Sus scrofa | ENSSSCG00000017212 | 15 retrocopies |