RetrogeneDB ID: | retro_sscr_719 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:131176983..131177448(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSSSCG00000003914 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 62.89 % |
Parental protein coverage: | 79.19 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SSGNAKIGH-RAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFKKLN |
SS.N.KIGH...PHFKA.AVM..GQ.KD.S.SDYKGKY..FFFY.L.F.F.C...I.AF..R.E.FKKLN | |
Retrocopy | SSENTKIGH<LCPHFKAMAVMASGQLKDVSPSDYKGKYIAFFFYTLGFSFGCSVKISAFRDRTEKFKKLN |
Parental | CQVIGASVDLTSVIWINTPK-KQGG-LGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIGASVD......INT.K..QGG..GP...P..SDPK.T.AQDY.VLK.DEG.S.RG..IIDDK..L. | |
Retrocopy | CQVIGASVDSHFLA*INTRK<EQGG<TGPVKTPWVSDPKHTTAQDY*VLKVDEGLSLRGHLIIDDKDAL* |
Parental | QITINDLPVGRSVDETLRL |
.I.INDL.VG.SV..TLR. | |
Retrocopy | KIIINDLLVGHSVKKTLRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .40 RPM | 152 .64 RPM |
SRP014902_testis | 1 .27 RPM | 79 .21 RPM |
SRP018288_heart | 0 .00 RPM | 23 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 110 .42 RPM |
SRP018288_liver | 0 .00 RPM | 86 .19 RPM |
SRP018288_lung | 0 .00 RPM | 109 .87 RPM |
SRP018856_adipose | 0 .02 RPM | 56 .36 RPM |
SRP035408_brain | 0 .06 RPM | 29 .09 RPM |
SRP035408_liver | 0 .18 RPM | 62 .70 RPM |