Parental gene:

RPL23A, ENSSSCG00000029802

Aliases:None
Description:ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]
Organism:Pig (Sus scrofa)
Coordinates:GL894032.2:19022..22561(-)


>ENSSSCG00000029802
ATGGCGCCGAAGGCAAAGAAGGAAGCCCCTGCCCCTCCCAAAGCCGAAGCCAAGGCAAAGGCTTTGAAGGCCAAGAAAGC
AGTGTTGAAAGGCGTCCACAGTCACAAAAAAAAGAAGATCCGGACGTCACCCACCTTCCGACGGCCCAAAACACTGCGAC
TCAGAAGGCAGCCCAAATATCCTCGGAAGAGTGCCCCTAGGAGAAACAAGCTTGACCACTATGCCATCATCAAGTTCCCC
CTCACCACTGAGTCAGCCATGAAGAAAATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTCAAGGCCAACAAGCA
CCAGATTAAACAGGCTGTGAAGAAGCTCTATGACATTGATGTGGCTAAGGTCAACACTTTGATCAGGCCTGATGGAGAGA
AGAAGGCATATGTTCGACTAGCTCCTGACTATGATGCTTTGGATGTTGCTAACAAAATTGGGATCATCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 1 .99 RPM
SRP014902_testis 9 .90 RPM
SRP018856_adipose 0 .52 RPM
SRP018288_kidney 3 .94 RPM
SRP018288_lung 1 .93 RPM
SRP018288_liver 6 .08 RPM
SRP018288_heart 0 .79 RPM
SRP035408_liver 0 .53 RPM
SRP035408_brain 0 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 ortholog_one2one 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
Sus scrofa ENSSSCG00000017768 within_species_paralog 9 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 ortholog_one2one 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_115 63.06 69.23
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2. retro_sscr_170 92.41 100.00
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3. retro_sscr_248 81.03 73.08
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4. retro_sscr_430 82.91 100.00
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Download FASTA sequences of all ENSSSCG00000029802 retrocopies