Parental gene:

Rpl23a, ENSMUSG00000058546

Aliases:Rpl23a, BC029892, MDA20
Description:ribosomal protein L23A [Source:MGI Symbol;Acc:MGI:3040672]
Organism:Mouse (Mus musculus)
Coordinates:11:78180931..78183584(-)


>ENSMUSG00000058546
ATGGCGCCGAAAGCGAAGAAGGAAGCTCCTGCCCCTCCCAAAGCCGAAGCCAAAGCGAAGGCCTTGAAAGCTAAGAAGGC
GGTGCTGAAAGGCGTCCACAGCCACAAAAAGAAGAAGATCCGAACGTCACCCACCTTCCGGCGGCCCAAGACCCTGCGGC
TCCGGAGGCAGCCAAAATATCCTCGGAAGAGTGCGCCCAGGAGAAACAAGCTTGACCACTATGCTATCATCAAATTCCCA
CTGACCACGGAGTCAGCCATGAAGAAAATAGAGGACAACAACACTCTTGTGTTCATTGTGGATGTCAAGGCCAATAAGCA
TCAGATCAAACAGGCTGTCAAGAAACTCTATGACATCGATGTGGCCAAAGTCAATACCCTGATAAGGCCCGACGGAGAGA
AGAAGGCGTATGTTCGCTTGGCTCCTGATTATGATGCCCTAGATGTTGCCAACAAGATTGGGATCATCTAA

Library Parental gene expression (RPM)
SRP007412_brain 7 .85 RPM
SRP007412_cerebellum 5 .56 RPM
SRP007412_heart 6 .85 RPM
SRP007412_kidney 6 .39 RPM
SRP007412_liver 6 .12 RPM
SRP007412_testis 5 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000013126 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
Felis catus ENSFCAG00000004021 possible_ortholog 35 retrogenes
Homo sapiens ENSG00000198242 possible_ortholog 57 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
Pongo abelii ENSPPYG00000008108 possible_ortholog 49 retrogenes
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
Rattus norvegicus ENSRNOG00000023344 possible_ortholog 6 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
Sus scrofa ENSSSCG00000029802 possible_ortholog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1 80.13 100.00
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2. retro_mmus_64 87.42 100.00
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3. retro_mmus_84 100.00 100.00
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4. retro_mmus_95 63.64 63.46
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5. retro_mmus_126 91.03 100.00
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6. retro_mmus_130 99.36 100.00
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7. retro_mmus_184 99.36 100.00
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8. retro_mmus_224 79.86 92.31
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Download FASTA sequences of all ENSMUSG00000058546 retrocopies