Parental gene:

HNRNPA2B1, ENSSTOG00000006202

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393288.1:2900709..2977437(-)


>ENSSTOG00000006202
CAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAACTCTTTATTGGTGGCTT
AAGTTTTGAAACCACAGAAGAAAGTTTAAGAAACTACTACGAGCAATGGGGAAAACTTACAGATTGTGTGGTTATGAGGG
ATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTCTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCA
AGACCTCATTCAATTGATGGGAGAGTGGTTGAGCCAAAACGAGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGAGCTCA
TGTGACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACCGAGGAACACCACCTTAGAGATTACTTTGAAGAAT
ATGGGAAAATTGACACCATTGAGATAATTACCGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGTTTTGTTACTTTTGAT
GACCATGATCCTGTGGACAAAATTGTGTTGCAAAAATACCACACCATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTT
GTCTAGACAAGAAATGCAAGAAGTCCAAAGTTCCAGGAGTGGAAGAGGAGGCAACTTTGGTTTTGGGGACTCCCGTGGTG
GCGGTGGAAATTTTGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCTGATGGATATGGAAGCGGACGTGGATTTGGG
GATGGCTATAATGGATATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGG
CTATGGTGGTGGAGGACCTGGATATGGAAACCAGGGTGGGGGCTATGGAGGTGGTTATGACAACTATGGAGGAGGAAATT
ATGGAAGTGGAAGTTATAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTT
GGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAATTATGGTCCTGGAGGAAGTGGAGGAAGTGGGGGTTATGG
TGGGAGGAGCCGATACTGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2one 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Ictidomys tridecemlineatus ENSSTOG00000006551 other_paralog 8 retrogenes
retro_itri_1291, retro_itri_1567, retro_itri_190, retro_itri_354, retro_itri_439, retro_itri_446, retro_itri_456, retro_itri_515,
Ictidomys tridecemlineatus ENSSTOG00000013979 within_species_paralog 1 retrogene
retro_itri_1177,
Ictidomys tridecemlineatus ENSSTOG00000025125 other_paralog 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_448 69.60 68.47
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2. retro_itri_717 73.29 89.77
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3. retro_itri_1723 75.80 79.83
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Download FASTA sequences of all ENSSTOG00000006202 retrocopies