Parental gene:

RPL36A, ENSSTOG00000027251

Aliases:None
Description:ribosomal protein L36a [Source:HGNC Symbol;Acc:10359]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393623.1:467504..470588(+)


>ENSSTOG00000027251
TTCGTCGCTCTCTCTGATTCCCACGAGAAAGTGCGAGCCGGAACCTCCTATATACTTCCGTTTCCGGCCCTCTTTCTTTC
TTTCCTTGCCGATAACGCTGCCGCAAACATGGTGAACGTTCCTAAGACCCGCCGGACGTTCTGTAAGAAATGTGGCAAAC
ACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCACAGGGAAAGCGGCGGTATGACAGGAAA
CAGAGTGGCTACGGTGGGCAGACCAAGCCAATTTTCAGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTGAGGCTTGA
GTGTGTTGAGCCTAACTGCAGATCTAAAAGAATGCTGGCTATTAAGAGATGCAAGCATTTTGAACTGGGAGGAGATAAGA
AGAGAAAGGGCCAAGTGATCCAGTTCTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008503 possible_ortholog 1 retrogene
retro_acar_98,
Callithrix jacchus ENSCJAG00000004864 possible_ortholog 4 retrogenes
retro_cjac_304, retro_cjac_353, retro_cjac_55, retro_cjac_72,
Homo sapiens ENSG00000241343 ortholog_one2one 14 retrogenes
retro_hsap_1477, retro_hsap_1508, retro_hsap_1595, retro_hsap_1782, retro_hsap_2, retro_hsap_2015, retro_hsap_2274, retro_hsap_2632, retro_hsap_3461, retro_hsap_3819, retro_hsap_3981, retro_hsap_4154, retro_hsap_4299, retro_hsap_647,
Monodelphis domestica ENSMODG00000025578 possible_ortholog 2 retrogenes
retro_mdom_1878, retro_mdom_971,
Mus musculus ENSMUSG00000079435 ortholog_one2one 1 retrogene
retro_mmus_4,
Pongo abelii ENSPPYG00000025837 ortholog_one2one 37 retrogenes
retro_pabe_1141, retro_pabe_1174, retro_pabe_121, retro_pabe_1226, retro_pabe_1256, retro_pabe_1311, retro_pabe_141, retro_pabe_1463, retro_pabe_1539, retro_pabe_154, retro_pabe_1540, retro_pabe_1616, retro_pabe_1650, retro_pabe_1651, retro_pabe_1944, retro_pabe_195, retro_pabe_2011, retro_pabe_2331, retro_pabe_2443, retro_pabe_2622, retro_pabe_2857, retro_pabe_296, retro_pabe_3057, retro_pabe_3151, retro_pabe_3273, retro_pabe_3372, retro_pabe_3687, retro_pabe_3704, retro_pabe_441, retro_pabe_449, retro_pabe_55, retro_pabe_573, retro_pabe_574, retro_pabe_667, retro_pabe_73, retro_pabe_772, retro_pabe_931,
Pteropus vampyrus ENSPVAG00000001569 possible_ortholog 1 retrogene
retro_pvam_17,
Rattus norvegicus ENSRNOG00000011494 possible_ortholog 1 retrogene
retro_rnor_259,
Sarcophilus harrisii ENSSHAG00000013479 possible_ortholog 1 retrogene
retro_shar_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_161 92.45 74.65
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2. retro_itri_290 56.90 80.99
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3. retro_itri_385 69.37 77.46
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4. retro_itri_430 85.22 79.58
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5. retro_itri_555 87.18 82.39
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6. retro_itri_609 83.13 58.45
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7. retro_itri_644 51.95 52.82
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8. retro_itri_730 55.42 57.75
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9. retro_itri_753 59.21 50.70
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10. retro_itri_784 91.96 78.17
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11. retro_itri_803 60.00 59.15
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12. retro_itri_845 83.15 62.68
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13. retro_itri_865 64.55 76.06
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14. retro_itri_903 92.86 68.31
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15. retro_itri_1171 92.44 83.10
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16. retro_itri_1189 54.92 83.10
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17. retro_itri_1364 59.13 78.87
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18. retro_itri_1405 69.91 77.46
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19. retro_itri_1471 81.44 66.90
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20. retro_itri_1681 62.39 75.35
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Download FASTA sequences of all ENSSTOG00000027251 retrocopies