RetrogeneDB ID: | retro_itri_845 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393332.1:3760076..3760340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSSTOG00000027251 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 83.15 % |
Parental protein coverage: | 62.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRML |
KC.KHQPHKVT...K.KDSLYAQGKR......SGYGGQTKPIFRK.AKTTKKIVLRLECVEPNCR.KRML | |
Retrocopy | KCDKHQPHKVTPHEKSKDSLYAQGKRLMTGN-SGYGGQTKPIFRKRAKTTKKIVLRLECVEPNCRAKRML |
Parental | AIKRCKHFELGGDKKRKGQ |
A.KRCKHFELG.DKKRKGQ | |
Retrocopy | AMKRCKHFELGRDKKRKGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |