RetrogeneDB ID: | retro_itri_609 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:13732097..13732346(-) | ||
Located in intron of: | ENSSTOG00000001067 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSSTOG00000027251 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 83.13 % |
Parental protein coverage: | 58.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFEL |
TQ.KKGKDS.YAQGK..YDRKQSGYGGQT..IF.K.AKTTKKIVLR..CVEPNCRSKRM..I.RCKHFEL | |
Retrocopy | TQ*KKGKDSPYAQGKQHYDRKQSGYGGQTRQIFGKRAKTTKKIVLRFKCVEPNCRSKRMVTINRCKHFEL |
Parental | GGDKKRKGQVIQF |
G.DKKRKGQVIQF | |
Retrocopy | GEDKKRKGQVIQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |