RetrogeneDB ID: | retro_itri_784 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393322.1:5611863..5612195(+) | ||
Located in intron of: | ENSSTOG00000000959 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSSTOG00000027251 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 91.96 % |
Parental protein coverage: | 78.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DNAAANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSL-YAQGKRRYDRKQSGYGGQTKPIFRKKAKTT |
D..A..MVNVPKTRRTFCKK..KHQPHKVTQYKKGKDS..YAQGKRRYDRKQSGYGGQTKPIF.KKAKTT | |
Retrocopy | DTSAVKMVNVPKTRRTFCKKWSKHQPHKVTQYKKGKDSF<YAQGKRRYDRKQSGYGGQTKPIFHKKAKTT |
Parental | KKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQ |
KKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQ | |
Retrocopy | KKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |