RetrogeneDB ID: | retro_itri_1189 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393396.1:1902357..1902715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSSTOG00000027251 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 54.92 % |
Parental protein coverage: | 83.1 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FLSFLADNAAANMVNV-PKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFR |
F..F.A....A.M.NV.PKT...F.KK.GKHQ..K..QYK...D...A.GK...DRKQS...GQTK.I.. | |
Retrocopy | FRAFCANSTPASMINV<PKTLWAFWKKYGKHQSYKQIQYKVDQDFQHA*GKQL*DRKQSSCDGQTKLILW |
Parental | K--KAKTTKKIVLRLECVEP-NCRSKRMLAIKRCKHFELGGDKKRKGQVIQF |
K..KA..TKKIVLRL....P.N.RS.RMLA..RC.H.ELGGD.KRK..V.Q. | |
Retrocopy | KKMKAESTKKIVLRLKALRP<NGRSQRMLAVTRCRHSELGGDRKRKSHVTQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |