RetrogeneDB ID: | retro_vpac_108 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1850:8729..9041(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSVPAG00000007007 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 81.73 % |
Parental protein coverage: | 52.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC |
.Y...VFFL.ITFS..YPFKPPKVTF.TR.Y.CNIN.QGVICLDI.K.NWSPALTISKVLLSICSL.T.C | |
Retrocopy | LYMKVVFFLNITFSSNYPFKPPKVTFCTRVYYCNINNQGVICLDIIKGNWSPALTISKVLLSICSLSTNC |
Parental | NPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT |
NPADP.VGSIATQY.TNRAEHDR.ARQWTKRY.T | |
Retrocopy | NPADPVVGSIATQYLTNRAEHDRIARQWTKRYTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010341 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005448 | 7 retrocopies | |
Felis catus | ENSFCAG00000007748 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016799 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000025144 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010615 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000005156 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006944 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000007007 | 3 retrocopies |
retro_vpac_108 , retro_vpac_315, retro_vpac_425,
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