RetrogeneDB ID: | retro_amel_93 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193330.1:5961..7698(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000018504 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSAMEG00000004520 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 59.56 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QLRGEELRLQEESVRLHQINIYLSDRISLHRRLPERWNPLCKEKKYDYNNLPTTSVIIAFYNEAWSTLLR |
QL...EL..QEE......INIYLSDRISLHR.........CK..K.DY..LPTTSVIIAFYNEAWSTLLR | |
Retrocopy | QLSEGELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKSRKFDYRRLPTTSVIIAFYNEAWSTLLR |
Parental | TVYSVLETSPDILLEEVILVDDYSDREHLKERLANELSGLPKVRLIRANRREGLVRARLLGASAAKGEVL |
T..SVLETSP..LL.E.ILVDD.SDR..LK..L....S.L..VRLIR.N.REGLVRARL.GA..A.G.VL | |
Retrocopy | TIHSVLETSPAVLLKEIILVDDLSDRVYLKTQLETYISNLDRVRLIRTNKREGLVRARLIGATFATGDVL |
Parental | TFLDCHCECHEGWLEPLLQRIHEEESAVVCPVIDVIDWNTFEYLGNPGEPQIGGFDWRLVFTWHVVPERE |
TFLDCHCEC..GWLEPLL.RI...E..VVCPVID.IDWNTFE.....GEP.IGGFDWRL.F.WH.VP..E | |
Retrocopy | TFLDCHCECNSGWLEPLLERISKDETTVVCPVIDTIDWNTFEFYMQTGEPMIGGFDWRLTFQWHSVPKHE |
Parental | RMRMRSPVDVIRSPTMAGGLFAVSKKYFEYLGSYDTGMEVWGGENLEFSFRIWQCGGTLETHPCSHVGHV |
R.R..S..D.IRSPTMAGGLFAVSKKYF.YLG.YDTGMEVWGGENLE.SFR.WQCGG.LE.HPCSHVGHV | |
Retrocopy | RDRRKSRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGENLELSFRVWQCGGKLEIHPCSHVGHV |
Parental | FPKQAPYSRNKALANSVRAAEVWMDEFKELYYHRNPHARLEPFGDVTERKQLRARLQCKDFRWFLENVYP |
FPK.APY.R...L.N..RAAEVWMDE.KE..Y.RNP.AR.E..GD..ERK.LR.RL.C..F.W.L.NV.. | |
Retrocopy | FPKRAPYARPNFLQNTARAAEVWMDEYKEHFYNRNPPARKEAYGDISERKLLRERLKCQSFDWYLKNVFS |
Parental | ELHVPEDRPGFFGMLQNKGLKDYCFDYNPPNENQIVGHQVLLYLCHGLGQNQFFEYTSQEEIRYNTHQPE |
.LHVPEDRPG..G.....G....C.DYN.P..N...G....L..CHG.G.NQFFEYTS..EIR.N....E | |
Retrocopy | NLHVPEDRPGWHGAVRSMGISSECLDYNSPDNNP-TGANLSLFGCHGQGGNQFFEYTSNKEIRFNS-VTE |
Parental | ACIAVEAGKDVLIMSLCQETA---PENQKFTLQEDGSLFHAQSNKCVQAERKAFSDSFVPLLRDCTDSEH |
.C..V...K....M..C.......P.N......EDG..FH..S..C..A.R.......V........... | |
Retrocopy | LCAEVPEQKKYVGMQNCPKDGFPIPANIIWHFKEDGTIFHPHSGLCLSAFRTPEGRPDVQMRTCDALDKN |
Parental | QKWLFKE |
Q.W.F.. | |
Retrocopy | QIWKFEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |